Job Description P16682 Confidence 96.71% Date Thu Jan 5 11:35:27 GMT 2012 Rank 121 Aligned Residues 187 % Identity 17% Template c2yjpB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae Resolution 2.26 Å

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		53	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		F	L	Q	D	M	E	K	K	L	G	.	.	.	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S
Query Conservation												.	.	.
Alig confidence												.	.	.										.																																											.	.	.	.	.	.	.	.
Template Conservation																								.																																											.	.	.	.	.	.	.	.
Template Sequence		I	A	K	D	L	A	K	D	L	L	G	S	P	D	K	V	E	F	V	L	T	E	.	A	A	N	R	V	E	Y	V	R	S	G	K	V	D	L	I	L	A	N	F	T	Q	T	P	E	R	A	E	A	V	D	F	A	D	P	Y	M	K	V	A	L	G	.	.	.	.	.	.	.	.	V	V	S	P	K	N	K
Template Known Secondary structure												S	S	G	G	G								.	G	G	G							T	T	S		S				S	S		B			T	T	G	G	G	T					S									.	.	.	.	.	.	.	.					T	T	S
Template Predicted Secondary structure																								.																																											.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K
Query Conservation
Alig confidence													.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	T	D	M	A	Q	L	K	D	Q	.	.	.	.	T	L	L	V	N	K	G	T	T	A	D	A	F	F	T	K	S	H	.	.	.	.	.	.	.	.	.	.	P	E	V	K	L	L	K	F	D	Q	N	T	E	T	F	D	A	L	K	D	G	R	G	V	A	L	A	H	D	N	A	L	L	W	A	W	A
Template Known Secondary structure					S	G	G	G	T	T	T	S	.	.	.	.						T	T	S											.	.	.	.	.	.	.	.	.	.	T	T	S						S	S										T	T	S	S	S
Template Predicted Secondary structure													.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R
Query Conservation
Alig confidence						.	.	.																							.
Template Conservation						.	.	.																							.
Template Sequence		K	E	N	P	.	.	.	N	F	E	V	A	I	G	N	L	G	P	A	E	F	I	A	P	A	V	Q	K	G	.	N	A	D	L	L	N	W	V	N	G	E	I	A	A	M	K	K	D	G	R	L	K	A	A	Y	E	K
Template Known Secondary structure					T	.	.	.	T								S	S	S										T	T	.																			S
Template Predicted Secondary structure						.	.	.																							.
Template SS confidence
		214	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions