Job Description P16682 Confidence 98.67% Date Thu Jan 5 11:35:27 GMT 2012 Rank 77 Aligned Residues 234 % Identity 12% Template c2vpnB_ PDB info PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata Resolution 1.55 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	.	.	.	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F
Query Conservation																																											.	.	.
Alig confidence																					.																						.	.	.
Template Conservation																					.
Template Sequence		D	N	W	R	Y	A	H	E	E	Y	E	G	D	V	Q	D	V	F	A	.	Q	A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	G	E	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q	I	F	F	I
Template Known Secondary structure									S	S		T	T	S							.											S	S								T	T	S	S		S										T	T	S		S										T	T	T	S	G	G	G	G	G	G	G	S
Template Predicted Secondary structure																					.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.																														.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	T	V	A	A	D	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.						.	.	.
Template Conservation																																																																				.	.	.	.	.	.						.	.	.
Template Sequence		P	Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I	N	E	M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	I	T	S	P	E	D	F	D	N	K	K	I	R	T	.	.	.	.	.	.	M	T	N	P	L	.	.	.
Template Known Secondary structure		T	T		S		S	S																T								T	T	T																	S	S				S	G	G	G	G	T	T						.	.	.	.	.	.		S				.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.						.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N
Query Conservation
Alig confidence		.	.													.	.	.	.	.	.																																						.	.	.	.
Template Conservation		.	.													.	.	.	.	.	.																																						.	.	.	.
Template Sequence		.	.	L	A	E	T	Y	K	A	F	G	A	T	P	.	.	.	.	.	.	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	G	I	I	D	G	Q	E	N	P	I	F	W	I	E	S	G	G	L	Y	E	V	S	P	.	.	.	.	N	L	T	F	T	S	H	G	W	F	T	T	A	M	M	A	N	Q	D
Template Known Secondary structure		.	.									T				.	.	.	.	.	.					G	G	G								T	S		S												T	T	G	G	G	T			.	.	.	.
Template Predicted Secondary structure		.	.													.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
				151	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
						239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																			.	.	.	.	.	.																.	.	.	.
Query SS confidence		.	.	.	.																			.	.	.	.	.	.																.	.	.	.
Query Sequence		.	.	.	.	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	.	.	.	.	.	.	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	.	.	.	.	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L
Query Conservation		.	.	.	.																			.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.	.	.																			.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		F	Y	E	G	L	S	E	E	D	Q	Q	L	V	Q	D	A	A	D	A	A	Y	D	H	T	I	E	H	I	K	G	L	S	E	E	S	L	E	K	I	K	A	A	S	D	E	V	T	V	T	R	L	N	D	E	Q	I	Q	A	F	K	E	R
Template Known Secondary structure						S																								T	T														T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions