Job Description P16682 Confidence 98.51% Date Thu Jan 5 11:35:27 GMT 2012 Rank 87 Aligned Residues 225 % Identity 12% Template c2vhaB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:periplasmic binding transport protein; PDBTitle: debp Resolution 1.00 Å

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		22	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.							.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure								.	.	.	.	.																					.						.	.	.	.	.	.											.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																					.						.	.	.	.	.	.											.	.	.	.	.	.	.
Query Sequence		S	P	A	H	A	E	.	.	.	.	.	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	.	P	Q	W	T	P	.	.	.	.	.	.	F	L	Q	D	M	E	K	K	L	G	.	.	.	.	.	.	.	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F
Query Conservation								.	.	.	.	.																					.						.	.	.	.	.	.											.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																					.						.	.	.	.	.	.											.	.	.	.	.	.	.									.
Template Conservation																																																																						.
Template Sequence		A	P	A	A	G	S	T	L	D	K	I	A	K	N	G	V	I	V	V	G	H	R	E	S	S	V	P	F	S	Y	Y	D	N	Q	Q	K	V	V	G	Y	S	Q	D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	.	T	S	Q	N	R	I	P	L	L	Q	N
Template Known Secondary structure					T	T	S									T								S			T	T	T					S	S	S				S																	T	T		T	T									.		T	T	T							T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		G	T	F	D	F	E	C	G	S	T	T	N	N	V	E	R	Q	K	Q	A	A	F	S	D	T	I	F	V	V	G	T	R	.	.	.	.	.	.	.	.	L	L	T	K	K	G	G	D	I	K	D	F	A	D	L	K	G	K	A	V	V	V	.	.	.	.	.	.	T	S	G	T	T	S	E	V	L	L	N	K
Template Known Secondary structure		T	S		S				S	S		B							T	T														.	.	.	.	.	.	.	.					T	T	S	S		S	S	G	G	G	G	T	T						.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T
Query Conservation
Alig confidence												.	.	.	.																																								.																							.
Template Conservation												.	.	.	.																																								.																							.
Template Sequence		L	N	E	E	Q	K	M	N	M	R	.	.	.	.	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V	A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	.	D	N	W	D	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	.	D	P	Q
Template Known Secondary structure						T	T					.	.	.	.					S	S										T	T	S		S														T	T	S	S	S	G	.	G	G					S			S											T	T	.
Template Predicted Secondary structure												.	.	.	.																																								.																							.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E	A	E	K	W	F	D	K	W
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions