Job Description P16682 Confidence 98.27% Date Thu Jan 5 11:35:27 GMT 2012 Rank 97 Aligned Residues 190 % Identity 16% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

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		53	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		F	L	Q	D	M	E	K	K	L	.	.	.	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S
Query Conservation											.	.	.
Alig confidence											.	.	.											.																													.	.	.	.	.	.	.	.
Template Conservation																								.																													.	.	.	.	.	.	.	.
Template Sequence		V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	L	V	A	V	N	.	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T	F	T	I	T	P	E	R	K	R	.	.	.	.	.	.	.	.	I	Y	N	F	S	E	P	Y	Y	Q	D	A	I	G	L	L	V	L	K	E	K
Template Known Secondary structure												S		T	T	S								.	T	T	T							T	T	S		S				S	S		B							T	.	.	.	.	.	.	.	.	T					S		S											G	G	G
Template Predicted Secondary structure																								.																													.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K
Query Conservation
Alig confidence																		.	.	.	.	.																					.	.	.	.	.
Template Conservation																		.	.	.	.	.																					.	.	.	.	.
Template Sequence		K	Y	K	S	L	A	D	M	K	G	A	N	I	G	V	A	.	.	.	.	.	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	I	D	V	.	.	.	.	.	K	F	S	E	F	P	D	Y	P	S	I	K	A	A	L	D	A	K	R	V	D	A	F	S	V	D	K	S	I	L	L	G	Y	V
Template Known Secondary structure					S	G	G	G	G	T	T							.	.	.	.	.	T	T		S													T				.	.	.	.	.						S	S										T	T	S	S	S										T	T	T
Template Predicted Secondary structure																		.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A
Query Conservation
Alig confidence					.	.	.	.	.	.																					.																.	.
Template Conservation					.	.	.	.	.	.																					.																.	.
Template Sequence		D	D	K	.	.	.	.	.	.	S	E	I	L	P	D	S	F	E	P	Q	S	Y	G	I	V	T	K	K	D	.	D	P	A	F	A	K	Y	V	D	D	F	V	K	E	H	.	.	K	N	E	I	D	A	L	A	K	K	W	G	L	D
Template Known Secondary structure			T	T	.	.	.	.	.	.					S				S										T	T	.															T	.	.											T	T
Template Predicted Secondary structure					.	.	.	.	.	.																					.																.	.
Template SS confidence
		183	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions