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Job DescriptionP16682
Confidence98.71%DateThu Jan 5 11:35:27 GMT 2012
Rank74Aligned Residues192
% Identity15%Templatec2rc9A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.. .......80.........90. ........100.........110.........120.
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Query Sequence  FLQDMEKKLGVKVNAFFAPD. . . . . . . . . . YAGIIQGMRFNKVDIAWYG. NLSAMEAVDRANGQVFAQTVAADGSPGYWS
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Template Sequence  LLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG. . . . . . . .
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   75....80.........90.........100.........110.........120.........130.........140......
 
   122.......130 .........140.........150.........160.........170.........180.........190...
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Query Sequence  VLIVNKDSP. . . . . . . INNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANK.
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Template Sequence  . ILVRTRGTELSGIHDPKLHHPSQGF. . . . RFGTVRESSAEDYV. . . . . . RQSFPEMHEYMRRYNVPATPDGVQYLKNDP
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   147..150.........160.........170. ........180..... ....190.........200.........210.....
 
   194.....200.........210.........220.........230.........240.........250.........260.......
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Query Sequence  . QVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL
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Template Sequence  EKLDAFIMDKALLDYEVSIDAD. . CKLLTVGKPFAIEGYGIGLPPN. SP. LTSNISELISQYKSHGFMDVLHDKW
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   216...220.........230....... ..240.........250......... 260. ........270.........280......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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