Job Description P16682 Confidence 99.60% Date Thu Jan 5 11:35:27 GMT 2012 Rank 30 Aligned Residues 252 % Identity 13% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.
Predicted Secondary structure																																					.	.																.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																																					.	.																.	.	.														.	.	.	.	.	.	.	.
Query Sequence		I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	.	.	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	.	.	.	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	.	.	.	.	.	.	.	D	R	A	N
Query Conservation																																					.	.																.	.	.														.	.	.	.	.	.	.	.
Alig confidence																																					.	.																.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	L	P	F	D	P	K	K	D
Template Known Secondary structure				S	S		T	T	S															T	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S		S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	.	.	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A
Query Conservation																																				.	.
Alig confidence													.	.	.	.	.	.																		.	.																																		.	.	.
Template Conservation													.	.	.	.	.	.																																																					.	.	.
Template Sequence		F	A	A	V	I	N	V	A	Y	V	P	.	.	.	.	.	.	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	.	.	.	H	M	V	H	V	P	Y	K
Template Known Secondary structure													.	.	.	.	.	.							T	T		S			S								T		S	S	S								S	S	T	T	S														T		.	.	.								S
Template Predicted Secondary structure													.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.																		.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	.	.	.	.	.	S	P	L	I	P	G	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	W	R	K	N	L
Query Conservation																																													.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.								.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	.	.	.	.	.	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T
Template Known Secondary structure		S										T	T	S	S	S															T	T	.	.	.	.	.	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T													T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V	K	S	N	K	G	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T	A	S	D	G	P	E	V	F	Q	K	M	V	E	T	D	I	D	R	F	S	A	L	T	K	Q	I	G	L	K	V	D
Template Known Secondary structure																														T																														T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions