Job Description P16682 Confidence 46.93% Date Thu Jan 5 11:35:27 GMT 2012 Rank 201 Aligned Residues 138 % Identity 12% Template c2ql3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V
Query Conservation
Alig confidence																						.	.	.																	.																								.	.	.	.	.
Template Conservation																						.	.	.																	.																								.	.	.	.	.
Template Sequence		P	I	A	V	G	C	Y	P	A	L	G	P	T	I	L	P	S	X	L	Y	.	.	.	A	F	T	A	E	Y	P	R	A	S	V	E	F	R	E	D	.	T	Q	N	R	L	R	T	Q	L	E	G	G	E	L	D	V	A	I	V	Y	D	L	D	.	.	.	.	.	L	S	P	E	W	Q	T	V	P	L	X	T
Template Known Secondary structure									G	G	G	T	T	T	T							.	.	.							T	T									.												T	S		S						S	S	S	.	.	.	.	.			S	S
Template Predicted Secondary structure																						.	.	.																	.																								.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	.	.	.	.	.	.	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T
Query Conservation																						.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.											.	.	.	.	.	.										.	.	.	.																			.	.										.	.	.
Template Conservation					.	.	.	.	.	.	.																										.	.	.	.																			.	.										.	.	.
Template Sequence		R	E	P	.	.	.	.	.	.	.	X	V	V	L	G	A	E	H	P	L	A	G	V	D	G	P	V	R	L	A	D	L	A	E	H	.	.	.	.	P	X	V	L	L	D	A	P	P	S	T	N	H	A	X	D	V	C	.	.	R	E	A	G	F	A	P	R	V	.	.	.	A	Y	R	T	A	N	F	E	T
Template Known Secondary structure					.	.	.	.	.	.	.						T	T	S	T	T	T	T	S		S		B		G	G	G	G	T	T	S	.	.	.	.								T	T										.	.			T	T						.	.	.					S
Template Predicted Secondary structure					.	.	.	.	.	.	.																										.	.	.	.																			.	.										.	.	.
Template SS confidence
		173	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	A	V	A	N	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	A	F	V	G	R	G	L
Template Known Secondary structure									T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions