Job Description P16682 Confidence 98.95% Date Thu Jan 5 11:35:27 GMT 2012 Rank 53 Aligned Residues 221 % Identity 15% Template c2q2aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus Resolution 1.79 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		S	P	A	H	A	E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	.	.	.	.	.	.	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.																				.
Template Conservation																																																										.
Template Sequence		S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	A	G	L	D	Y	E	L	K	N	I	G	.	W	D	P	L	F	A	S	L	Q	S	K	E	V	D	M	G	I	S	G	I	T	I	T
Template Known Secondary structure		T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													T	T										.											T	S	S					S	S		B
Template Predicted Secondary structure																																																										.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		D	E	R	K	Q	S	Y	D	F	S	D	P	Y	F	E	A	T	Q	V	.	.	.	.	.	.	.	.	I	L	V	K	Q	G	S	P	V	K	N	A	L	D	L	K	G	K	.	.	.	.	T	I	G	V	Q	N	A	T	T	G	Q	E	A	A	E	K	L	F	.	.	.	.	.	.	.	.	.	G	K	G	P
Template Known Secondary structure						T	T					S									.	.	.	.	.	.	.	.					T	T					S	G	G	G	G	T	T	S	.	.	.	.						T	T	S											.	.	.	.	.	.	.	.	.		S	S	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		H	I	K	K	F	E	T	T	V	V	A	I	M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A	V	A	N	E	Y	V	K	N	N	P	N	.	.	K	K	L	Q	V	I	E	D	P	K	N	F	A	S	E	Y	Y	G	M	I	F	P	K	N	S	E	L	K	A	K	V	D	E	A	L	K	N	V	I
Template Known Secondary structure		T					S	S										T	T	S	S	S																	G	G	.	.	G								T	T	T	S											T	T		T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	P	E	E	K	A	V	L	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	G	K	Y	T	E	I	Y	K	K
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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