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Job DescriptionP16682
Confidence98.90%DateThu Jan 5 11:35:27 GMT 2012
Rank58Aligned Residues224
% Identity18%Templatec2pfzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.. .......80.........90...
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Query Sequence  KALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPD. . . . . YAGIIQGMRFNKVDIAWYGNL. . . . . . . . . . . .
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Template Sequence  TKWDLPTAYPASN. LHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELD
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SS
TTS.TTS

TTSSS
GGGTTSSSGGGGTTT
GGGTGG
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   2.......10.... .....20.........30.........40.........50.........60.........70.........80
 
   94.....100.........110.........120.........130.........140.........150..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . SAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPN
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Template Sequence  GLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPP. . . . . . . . QGIFANRDIKQVSDMKGL. . . . KWRAYSP.
Template Known Secondary structure  GSTTS

STTT


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SSGGGGTT
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   81........90.........100.........110.........120.. .......130.........140 .......
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  STSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDP
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Template Sequence  . . . . . . VTAKIAELVGA. . . . . . . QPVTVQQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIK. . . . KFYDTEAWLPKNA
Template Known Secondary structure  ......T
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GGGTTS
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   148.150........ .160.........170.........180.........190....... ..200.........210
 
   233..... .240.........250...... ...260.........270.........280......
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Query Sequence  IVWRKN. . . . LSETTKDKIYDFFMNYGK. . . . . . . . . TPEEKAVLERLGWAPFRASSDLQLVPIRQL
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Template Sequence  VLVNKKAFDALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMA. IIAPTAELKSGLTEV
Template Known Secondary structure  TS
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   211........220.........230.........240.........250.........260. ........270......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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