Job Description P16682 Confidence 98.81% Date Thu Jan 5 11:35:27 GMT 2012 Rank 67 Aligned Residues 222 % Identity 14% Template c2pfyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.95 Å

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		32	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure							.																																						.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																						.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	F	G	.	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	.	.	.	.	.	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.																																						.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.										.	.																											.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.
Template Sequence		S	W	T	X	T	A	E	Q	P	D	A	N	Y	L	T	.	.	Q	N	A	R	Q	F	A	D	E	V	K	A	A	T	A	G	A	L	E	I	K	V	Q	S	N	S	T	L	L	K	R	P	E	V	K	R	G	V	Q	Q	G	V	V	Q	I	G	E	V	L	V	S	A	L	G	N	E	D	P	L	F	E	I	D
Template Known Secondary structure								S	S		T	T	S				.	.														T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S						G	G	G	G	T	T	T		G	G	G	G	G	G
Template Predicted Secondary structure																	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																							94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		S	V	P	F	L	A	S	S	F	N	E	S	E	K	L	W	K	A	T	R	P	L	L	A	Q	R	L	D	K	Q	G	I	V	L	V	Y	G	S	P	W	P	P	.	.	.	.	.	.	.	.	Q	G	I	Y	T	K	K	P	V	A	A	L	A	D	L	K	G	T	R	F	R	A	.	.	.	.	.	.	Y	S
Template Known Secondary structure		G	S	T	T	T	S		S																					T	T	T												.	.	.	.	.	.	.	.						S	S			S	S	G	G	G	G	T	T						.	.	.	.	.	.		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P
Query Conservation
Alig confidence									.	.	.	.	.	.								.	.	.	.	.	.																																						.	.	.	.
Template Conservation									.	.	.	.	.	.								.	.	.	.	.	.																																						.	.	.	.
Template Sequence		A	S	T	S	H	X	A	.	.	.	.	.	.	A	L	X	G	A	V	P	.	.	.	.	.	.	T	T	V	Q	T	P	E	V	P	Q	A	F	S	T	G	V	I	D	A	X	L	T	S	P	A	T	G	V	D	S	Q	A	W	D	Y	V	K	.	.	.	.	Y	Y	Y	D	A	Q	A	F	I	P	Q	S	F
Template Known Secondary structure									.	.	.	.	.	.			T	T	S			.	.	.	.	.	.					G	G	G							T	T	S		S	B											T	T	G	G	G	T			.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.								.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.							.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210
		233	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		I	V	W	R	K	N	.	.	.	.	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	.	.	.	.	.	.	.	.	.	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L
Query Conservation								.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																			.	.	.	.	.	.	.	.	.													.
Template Conservation																																																			.
Template Sequence		V	I	A	N	K	R	A	F	Q	R	L	P	A	E	V	R	Q	A	V	L	D	A	G	A	K	A	E	I	R	G	W	Q	T	A	R	A	K	T	R	E	L	T	D	T	L	A	R	N	G	.	X	S	V	E	P	L	P	P	Q	L	A	K	E	L	Q	A	I
Template Known Secondary structure												S																																					T	T	.
Template Predicted Secondary structure																																																			.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions