Job Description P16682 Confidence 98.54% Date Thu Jan 5 11:35:27 GMT 2012 Rank 85 Aligned Residues 189 % Identity 15% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		53	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		F	L	Q	D	M	E	K	K	L	.	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I
Query Conservation											.
Alig confidence											.											.																																											.	.	.	.	.	.
Template Conservation																						.																																											.	.	.	.	.	.
Template Sequence		L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	.	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K	K	F	L	F	N	K	V	A	Y	N	H	F	P	L	.	.	.	.	.	.	K	I	T	V	L	Q	N	N	D	T	I
Template Known Secondary structure											T	T										.	G	G	G						G	G	G	S		S				S																S	S								.	.	.	.	.	.						T	T			S
Template Predicted Secondary structure																						.																																											.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		R	G	I	E	D	L	K	G	K	R	V	I	T	S	.	.	.	.	.	.	.	.	.	A	G	A	L	V	L	K	K	W	N	E	D	N	G	R	.	.	.	.	.	.	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T
Template Known Secondary structure		S	S	G	G	G		T	T							.	.	.	.	.	.	.	.	.											T	T	T	T		.	.	.	.	.	.		S																S	S		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L
Query Conservation
Alig confidence																			.	.	.								.
Template Conservation																			.	.	.								.
Template Sequence		S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	.	.	.	Y	F	X	F	N	K	N	.	E	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D	G	T	L	K	R	L	S	L	K	W
Template Known Secondary structure			S	S															.	.	.						G	G	.	G																	T	T
Template Predicted Secondary structure																			.	.	.								.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions