Job Description P16682 Confidence 99.61% Date Thu Jan 5 11:35:27 GMT 2012 Rank 29 Aligned Residues 215 % Identity 11% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																					.	.	.	.															.	.	.	.	.
Query SS confidence																																						.																					.	.	.	.															.	.	.	.	.
Query Sequence		Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	.	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	.	.	.	.	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	.	.	.	.	.
Query Conservation																																						.																					.	.	.	.															.	.	.	.	.
Alig confidence																									.	.	.											.																					.	.	.	.															.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	.	.	.	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I
Template Known Secondary structure		S		S								S	S	G	G	G									.	.	.	T	T					T	T		T								S	S												T	T	T	T	S		S						T	T							T	T	T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
			99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.															.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y
Query Conservation		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																				.	.	.	.	.																																			.	.	.	.
Template Sequence		T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	.	.	.	.	.	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	.	.	.	.	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y
Template Known Secondary structure		T	T	T													B			.	.	.	.	.							G	G	G	T	T	T	T		S	S			G	G	G						T						S	S	.	.	.	.							S	S	T	T	S
Template Predicted Secondary structure																				.	.	.	.	.																																			.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	.	.	.	.	I	P	G	D	P	I	V	W	R	K	N	L
Query Conservation																																																																		.	.	.	.
Alig confidence																																																				.	.	.	.	.										.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	.	.	.	.	.	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W
Template Known Secondary structure						T	T			T	T	T	T	S																	T									T	T								T	T	S	.	.	.	.	.											S	T	T
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	K	N	P	K	A	T	K	A	L	L	K	G	I	M	E	A	Q	Q	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions