Job Description P16682 Confidence 98.69% Date Thu Jan 5 11:35:27 GMT 2012 Rank 76 Aligned Residues 255 % Identity 13% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	.	.	.	.	.	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	W	R	L	A	S	S	F	P	K	S	L	D	T	I	F	G	G	A	E	V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A	L	A	A
Template Known Secondary structure								S	S		T	T	S																	T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T					T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
																								94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		A	V	P	F	S	L	S	A	R	G	I	N	A	W	H	Y	H	G	G	G	I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	.	.	.	.	.	.	.	X	G	G	W	F	R	R	E	I	N	T	V	A	D	X	Q	G	L	K	X	R	V	G	.	.	.	.	.	.
Template Known Secondary structure				T	T														S	S										G	G	G	T											S	B	.	.	.	.	.	.	.						S	S				S	S	G	G	G	T	T							.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	.	.	.	L	I
Query Conservation																																																																													.	.	.
Alig confidence		.	.	.	.	.	.	.															.	.	.	.	.	.																														.	.	.	.																.	.	.
Template Conservation		.	.	.	.	.	.	.															.	.	.	.	.	.																														.	.	.	.
Template Sequence		.	.	.	.	.	.	.	G	F	A	G	K	V	X	E	R	L	G	V	V	P	.	.	.	.	.	.	Q	Q	I	A	G	G	D	I	Y	P	A	L	E	K	G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	.	.	.	.	K	L	G	F	F	K	V	A	P	Y	Y	Y	Y	P	G	W	W	E	G	G
Template Known Secondary structure		.	.	.	.	.	.	.									T	T	T				.	.	.	.	.	.					G	G	G								T	S		S												.	.	.	.	T	T	T	G	G	G	T								B	T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.															.	.	.	.	.	.																														.	.	.	.
Template SS confidence
									180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		229	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		P	G	D	P	I	V	W	R	K	N	.	.	.	.	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	.	.	.	.	.	.	.	.	.	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V
Query Conservation												.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																			.	.	.	.	.	.	.	.	.															.
Template Conservation																																																									.
Template Sequence		P	T	V	H	F	X	F	N	K	S	A	Y	E	G	L	T	P	T	Y	Q	S	L	L	R	T	A	C	H	A	A	D	A	N	X	L	Q	L	Y	D	W	K	N	P	T	A	I	K	S	L	V	A	Q	G	T	Q	.	L	R	P	F	S	P	E	I	L	Q	A	C	F	E	A	A	N	E	V	Y	A	E	X	E
Template Known Secondary structure																S																																					T	T			.
Template Predicted Secondary structure																																																									.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	N	K	G	L	N	E	Q	D	K	L	A	K	T	T	E	I	Q	A	Q	L	D	D
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		A	S	N	P	A	F	.	.	K	K	I	W	D	S	I	K	A	F	R	S	E	H	Y	T
Template Known Secondary structure								.	.
Template Predicted Secondary structure								.	.
Template SS confidence
		322	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions