Job Description P16682 Confidence 99.70% Date Thu Jan 5 11:35:27 GMT 2012 Rank 24 Aligned Residues 216 % Identity 10% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																			.	.	.	.																			.
Query SS confidence																																								.																			.	.	.	.																			.
Query Sequence		A	E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	.	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	.	.	.	.	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.
Query Conservation																																								.																			.	.	.	.																			.
Alig confidence																												.	.	.										.																			.	.	.	.																			.
Template Conservation																												.	.	.
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	.	.	.	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M
Template Known Secondary structure					S		S								S	S	G	G	G									.	.	.	T	T					T	T		T	T							S													G	G	G	T	S		S						T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.												.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	.	.	.	.	.	.	.	.	.	.	.	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y
Query Conservation		.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.															.	.
Template Conservation																							.	.	.	.	.																																.	.	.	.															.	.
Template Sequence		G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	.	.	.	.	.	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	.	.	.	.	K	V	A	M	T	F	P	G	G	T	H	D	M	W	.	.	I	R	Y
Template Known Secondary structure			T	T	S	S	S													B	S		.	.	.	.	.							G	G	G	G	G	G				S			T	T							T	S	S	S		.	.	.	.					S	S	T	T	S						.	.
Template Predicted Secondary structure																							.	.	.	.	.																																.	.	.	.															.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.	.	.	P	G	D	P	I	V	W	R	K	N	L
Query Conservation																																																																			.	.	.	.
Alig confidence																																																				.	.	.	.	.											.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	.	.	.	.	.	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W
Template Known Secondary structure						T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T									T	S	.	.	.	.	.							G	G	G	T	B	T	T		B
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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