Job Description P16682 Confidence 62.55% Date Thu Jan 5 11:35:27 GMT 2012 Rank 184 Aligned Residues 196 % Identity 11% Template c2f7cA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate Resolution 2.16 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T
Query Conservation
Alig confidence																							.	.	.																	.																									.	.	.	.	.
Template Conservation																							.	.	.																	.																									.	.	.	.	.
Template Sequence		Q	T	L	R	I	G	Y	V	S	S	L	L	Y	G	L	L	P	E	I	I	Y	.	.	.	L	F	R	Q	Q	N	P	E	I	H	I	E	L	I	E	C	.	G	T	K	D	Q	I	N	A	L	K	Q	G	K	I	D	L	G	F	G	R	L	K	I	T	.	.	.	.	.	D	P	A	I	R	R	I	V	L	H
Template Known Secondary structure										G	G	G	G	G	T	T							.	.	.							T	T	S								.											T	T	S		S					S	S				.	.	.	.	.	B	T	T
Template Predicted Secondary structure																							.	.	.																	.																									.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	.	.	.	.	.	.	.	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H
Query Conservation																							.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.												.	.	.	.	.	.	.										.	.	.	.																														.	.
Template Conservation					.	.	.	.	.	.	.																												.	.	.	.																														.	.
Template Sequence		K	E	Q	.	.	.	.	.	.	.	L	K	L	A	I	H	K	H	H	H	P	N	Q	F	A	A	T	G	V	H	L	S	Q	I	I	D	E	.	.	.	.	P	M	L	L	Y	P	V	S	Q	K	P	N	F	A	T	F	I	Q	S	L	F	T	E	L	G	L	V	P	S	.	.	K	L	T	E	I	R	E	I
Template Known Secondary structure					.	.	.	.	.	.	.							T	T	S		T	T	T	S		T	T		B		G	G	G	G	T	T	S	.	.	.	.								S	S	S	S	S											T	T	T				S	.	.						S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																												.	.	.	.																														.	.
Template SS confidence
		161	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		Q	L	A	L	G	L	V	A	A	G	E	G	V	C	I	V	P	A	S	.	.	.	.	.	.	A	M	D	I	G	V	K	N	L	L	Y	I	P	I	L	D	D	D	A	Y	S	P	I	S	L	A	V	R	N	M	D	H	S	N	Y	I	P	K	I	L	A	C	V	Q	E	V
Template Known Secondary structure											T	S							G	G	.	.	.	.	.	.	G	G	G	S	S		S	S						B		S	T	T											T	T				T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions