Job Description P16682 Confidence 99.52% Date Thu Jan 5 11:35:27 GMT 2012 Rank 37 Aligned Residues 240 % Identity 15% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.
Predicted Secondary structure																																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	.	.	.	.	.	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	.	.	.	.	.	.	.	D	R	A	N
Query Conservation																																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	P	F	A	A	G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G	Y	E	P	Y	T	S
Template Known Secondary structure				S	S		T	T	S																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	.	.	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A
Query Conservation																																												.	.
Alig confidence													.	.	.	.	.	.																										.	.																											.	.	.
Template Conservation													.	.	.	.	.	.																																																						.	.	.
Template Sequence		F	E	P	I	G	L	V	V	D	V	P	.	.	.	.	.	.	X	T	I	I	A	R	G	D	F	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L	G	V	N	.	.	.	L	L	T	I	P	Y	K
Template Known Secondary structure													.	.	.	.	.	.							T	T		S			S												G	G	G						S		T	T	S														T			.	.	.							S
Template Predicted Secondary structure													.	.	.	.	.	.																																																						.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.																							.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	V	W	R	K	N	L
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	.	.	.	.	.	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T
Template Known Secondary structure		S										T	T	S	S																	T	.	.	.	.	.	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T													T	T
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	.	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	L	G	A	E	V	L	T	N	E	A	N	P	E	A	L	Q	A	K	V	K	Q	Q	V	P	Q
Template Known Secondary structure																													T	T					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions