Job Description P16682 Confidence 99.53% Date Thu Jan 5 11:35:27 GMT 2012 Rank 36 Aligned Residues 258 % Identity 14% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																					.	.																.	.	.																			.	.	.	.	.	.	.
Query SS confidence																																					.	.																.	.	.																			.	.	.	.	.	.	.
Query Sequence		I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	.	.	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	.	.	.	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	.	.	.	.	.	.	.
Query Conservation																																					.	.																.	.	.																			.	.	.	.	.	.	.
Alig confidence																																					.	.																.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D	L	P	Y	D	P	I
Template Known Secondary structure				S	S		T	T	S																		T	S										G	G	G										S		T	T	S	S											T						S	T	T	T		S			T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
					105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																										.	.
Query SS confidence		.	.	.																																										.	.
Query Sequence		.	.	.	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	.	.	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V
Query Conservation		.	.	.																																										.	.
Alig confidence		.	.	.											.	.	.	.	.	.																										.	.																										.	.	.
Template Conservation															.	.	.	.	.	.																																																					.	.	.
Template Sequence		K	D	F	Q	P	V	T	N	F	A	N	T	A	.	.	.	.	.	.	N	V	V	A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	.	.	.	D	I	V	H	V	P
Template Known Secondary structure		T	S												.	.	.	.	.	.							T	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T		.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.																		.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	W	R	K	N	L	S	E	T
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D
Template Known Secondary structure			S	S											T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V	K	S	N	K	G	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	A	L	D	D	Q	G	S	A	P	S	G	N	T	P	E	E	F	A	K	E	I	K	E	Q	Y	D	W	A	Q	D	V	V	K	K	Q	N	I	K	L	D	E
Template Known Secondary structure															T												T																												S	T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions