Job Description P16682 Confidence 96.76% Date Thu Jan 5 11:35:27 GMT 2012 Rank 120 Aligned Residues 222 % Identity 14% Template c1yaeB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: structure of the kainate receptor subunit glur6 agonist binding domain2 complexed with domoic acid Resolution 3.11 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.													.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	A	G	I	I	Q	G	M	R	F	N
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	R	S	L	I	V	T	T	I	L	E	E	P	Y	V	L	F	K	K	S	D	K	P	L	Y	G	N	D	R	F	E	G	Y	C	I	D	L	L	R	E	L	S	T	I	L	G	F	T	Y	E	I	R	L	V	E	D	G	K	Y	G	A	Q	D	D	V	N	G	Q	W	N	G	M	V	R	E	L	I	D	H
Template Known Secondary structure		T	T										B	T	T	T	B						S	S				G	G	G	G			S																							S	S						B		T	T	T			B		S							T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	.	.
Query Conservation																																																																																.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																						.																		.	.
Template Conservation																																.	.	.	.	.	.	.	.	.																						.
Template Sequence		K	A	D	L	A	V	A	P	L	A	I	T	Y	V	R	E	K	V	I	D	F	S	K	P	F	M	T	L	G	I	.	.	.	.	.	.	.	.	.	S	I	L	Y	R	K	P	N	I	D	S	A	D	D	L	A	K	Q	T	K	I	.	E	Y	G	A	V	E	D	G	A	T	M	T	F	F	K	K	S	K	I
Template Known Secondary structure		S		S				S	S		B							T	T							S						.	.	.	.	.	.	.	.	.											S									S	S	.					B	T	T	S											S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.										.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E
Query Conservation
Alig confidence																																																						.	.	.	.	.																							.
Template Conservation																																																						.	.	.	.	.																							.
Template Sequence		S	T	Y	D	K	M	W	A	F	M	S	S	R	R	Q	S	V	L	V	K	S	N	E	E	G	I	Q	R	V	L	T	S	D	Y	A	F	L	M	E	S	T	T	I	E	F	V	T	Q	R	N	C	N	.	.	.	.	.	L	T	Q	I	G	G	L	I	D	S	K	G	Y	G	V	G	T	P	M	G	S	P	.
Template Known Secondary structure														T						B	S	S											S	S															T	T		T	T	.	.	.	.	.					S	S		S	S										S	S		S	.
Template Predicted Secondary structure																																																						.	.	.	.	.																							.
Template SS confidence
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.						.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Y	R	D	K	I	T	I	A	I	L	Q	L	Q	E	E	G	K	L	H	M	M	K	E	K	W
Template Known Secondary structure		.	S															T
Template Predicted Secondary structure		.
Template SS confidence
			774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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