Job Description P16682 Confidence 99.15% Date Thu Jan 5 11:35:27 GMT 2012 Rank 47 Aligned Residues 198 % Identity 18% Template c1lfgA_ PDB info PDB header:transferrin Chain: A: PDB Molecule:lactoferrin; PDBTitle: molecular replacement solution of the structure of apolactoferrin, a2 protein displaying large-scale conformational change Resolution 2.20 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.														.	.	120	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	W	S
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		N	Q	W	S	G	L	S	E	G	S	V	T	C	S	S	A	S	T	T	E	D	C	I	A	L	V	L	K	G	E	A	D	A	M	S	L	D	G	G	Y	V	Y	T	A	G	K	.	C	G	L	V	P	V	L	A	E	N	Y	K	S	A	Q	S	S	D	P	D	P	N	C	V	D	R	P	V	E	G	Y	L	A
Template Known Secondary structure							T	T	T	T	S							S	S										T	T	S			B														.	T	T												S	S			S	S		T	T	G	G	G	S
Template Predicted Secondary structure																																																.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		V	A	V	V	R	R	S	D	T	S	L	T	W	N	S	V	K	G	K	.	.	.	.	K	S	C	H	T	A	V	D	R	T	A	G	W	N	I	P	M	G	L	L	F	N	Q	T	G	S	C	K	F	D	E	Y	F	S	Q	S	C	A	P	G	S	D	P	A	S	N	L	C	A	L	C	I	G	D	E	E	G
Template Known Secondary structure							T	T		T	T			G	G	G		T	T	S	.	.	.	.					S		T	T		T	T	T	T																G	G	G	S	S	S					T	T	S		T	T	S	G	G	G	T	T				S	T	T	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.					.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	.	.	.	.	.	.	.	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	K	C	V	P	N	S	N	E	R	Y	Y	G	Y	T	G	A	F	R	C	L	A	E	N	A	G	D	V	A	F	V	K	D	V	T	V	L	Q	N	T	D	G	N	N	N	E	A	W	A	K	D	L	K	L	A	D	F	A	L	L	C	L	D	G	K	R	K	P	V	T	E	A	R	S	C	H	L	A	M
Template Known Secondary structure			S	T	T		S	S	T	T	S	T	T												T	T	S		S						T						T	S	S	S	S			S	T	T	T	T	T			G	G	G						T	T	S					G	G	G	G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
			229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	P	N	H	A	V	V	S	R	M	D	K	V	E	R	L	K	Q	V	L	L	H	Q	Q	A	K	F	G	R	N
Template Known Secondary structure											G	G	G																S	T	T
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions