Job Description P43672 Confidence 100.00% Date Wed Jan 25 15:20:54 GMT 2012 Rank 3 Aligned Residues 474 % Identity 23% Template c3bk7A_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii Resolution 2.80 Å

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		4	.	.	.	.	.									10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.																		.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.																		.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	M	H	G	A	.	.	.	.	.	.	.	.	W	L	S	F	S	D	A	P	L	L	D	N	A	E	L	H	I	.	E	D	N	E	R	V	C	L	V	G	R	N	G	A	G	K	S	T	L	M	K	I	L	N	R	E	Q	G	L	D	D	G	R	I	I	Y	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.																		.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.								.										.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		I	S	I	V	N	L	P	E	Q	L	D	E	D	C	V	H	R	Y	G	V	N	.	A	F	V	L	Y	R	L	P	I	V	K	D	G	M	V	V	G	I	V	G	P	N	G	T	G	K	T	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	E	D	N	D	S	W	D	N	V	I	R	A	F	R	G	N
Template Known Secondary structure									T	T	G	G	G	S						S	T	T	.												T	T	S								T	T	S	S									T	T	S	S				T	T	T	T											T	T	T	S
Template Predicted Secondary structure																							.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
													64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	Q	D	L	I	V	A	R	L	Q	Q	D	P	P	R	N	V	E	G	.	.	.	S	V	Y	D	F	V	A	E	G	I	E	E	Q	A	E	Y	L	K	R	Y	H	D	I	S	R	L	V	M	N	D	P	S	E	K	N	L	N	E	L	A	K	V	Q	E	Q	L	D	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	Q	N	Y	F	E	R	L	K	N	G	E	I	R	P	V	V	K	P	Q	Y	V	D	L	L	P	K	A	V	K	G	K	V	R	E	L	L	K	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T											T	S								S		G	G	G	G	G	G	T			S	B								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.
Predicted Secondary structure																						.	.																																																						.	.	.
Query SS confidence																						.	.																																																						.	.	.
Query Sequence		H	N	L	W	Q	L	E	N	R	I	N	E	V	L	A	Q	L	G	L	D	.	.	P	N	V	A	L	S	S	L	S	G	G	W	L	R	K	A	A	L	G	R	A	L	V	S	N	P	R	V	L	L	L	D	E	P	T	N	H	L	D	I	E	T	I	D	W	L	E	G	F	L	K	T	F	.	.	.	N	G
Query Conservation																						.	.																																																						.	.	.
Alig confidence		.	.	.	.																	.	.																																																						.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	D	E	V	G	K	F	E	E	V	V	K	E	L	E	L	E	N	V	L	D	R	E	L	H	Q	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R	K	A	H	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	K	V	A	R	V	I	R	R	L	A	N	E	G	K
Template Known Secondary structure		.	.	.	.			S	S									T	T		T	T	G	G	G	S	B	G	G	G																	S			S							T	T	T	T																			T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	I	F	I	S	H	D	R	S	F	I	R	N	M	A	T	R	I	V	D	L	D	R	G	K	L	V	T	Y	P	G	N	Y	D	Q	Y	L	L	E	K	E	E	A	L	R	V	E	E	L	Q	N	A	E	F	D	R	K	L	A	Q	E	E	V	W	I	R	Q	G	I	K	A	R	R	T	R	N	E	G	R
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	V	I	H	V	V	Y	G	E	P	G	V	Y	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	K	P	K	G	T	R	N	G	I	N
Template Known Secondary structure								S										S							S		T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																																						.	.	.	300	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	L	K	A	M	R	R	E	R	G	E	R	R	E	V	M	G	T	A	K	M	Q	V	E	E	A	S	R	S	G	K	I	V	F	E	M	E	D	V	C	Y	Q	V	N	G	K	Q	L	V	K	D	F	S	A	Q	V	L	R	G	D	K	I	A	L	I	G	P	N	G	C	G	K	T	T	L	L	K	L
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		E	F	L	Q	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	R	F	T	K	L	S	E	R	V	D	V	E	R	E	T	L	V	E	Y	P	R	L	V	K	D	Y	G	S	F	K	.	L	E	V	E	P	G	E	I	R	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	M
Template Known Secondary structure						T			T	T	T	T					S	S							S	T	T	S																			S	S			.										T	T									T	T	S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	G	Q	L	Q	A	D	S	G	R	I	H	V	G	T	K	L	E	V	A	Y	F	D	Q	H	R	A	E	L	D	P	D	K	T	V	M	D	N	L	A	E	G	K	Q	E	V	M	V	N	G	K	P	R	H	V	L	G	Y	L	Q	D	F	L	F	H	P	K	R	A	M	T	P	V	R	A	L	S	G	G
Query Conservation
Alig confidence																.	.												.																		.	.																				.
Template Conservation																.	.												.																		.	.																				.
Template Sequence		L	A	G	V	E	E	P	T	E	G	K	V	E	W	.	.	D	L	T	V	A	Y	K	P	Q	Y	I	.	K	A	E	Y	E	G	T	V	Y	E	L	L	S	K	I	D	S	.	.	S	K	L	N	S	N	F	Y	K	T	E	L	L	K	P	L	G	I	I	.	D	L	Y	D	R	N	V	E	D	L	S	G	G
Template Known Secondary structure				T	S	S			S	B	S					.	.									S	S		.					S	S	B											.	.												T					T		T	.	T	T	T	T	S	B	G	G	G
Template Predicted Secondary structure																.	.												.																		.	.																				.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		E	R	N	R	L	L	L	A	R	L	F	L	K	P	S	N	L	L	I	L	D	E	P	T	N	D	L	D	V	E	T	L	E	L	L	E	E	L	I	D	S	Y	.	.	.	.	Q	G	T	V	L	L	V	S	H	D	R	Q	F	V	D	N	T	V	T	E	C	W	I	F	E	G	G	G	K	I	G	R	Y	V
Query Conservation																																												.	.	.	.
Alig confidence																																												.	.	.	.
Template Conservation
Template Sequence		E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S	A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	M	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	M	I	D	Y	V	S	D	R	L	I	V	F	E	G	E	P	G	R	H	G	R	A
Template Known Secondary structure													T	S			S							T	T	T	T																				T	T								S										S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Y	H	D	A	R	G	Q	Q	E	Q	Y	V	A	L	K	Q	P	A	V	K	K	T	E	E	A	A	A	A	K	A	E	T	V	K	R	S	S	S	K	L	S	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	P	M	G	M	R	E	G	M	N	R	F	L	A	S	V	G	I	T	F	R	R	D	P	D	S	G	R	P	R	A	N	K	E	G	S	V	K	D	R	E	Q	K	A
Template Known Secondary structure																T	T	T	T							T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.