Job Description P43672 Confidence 99.71% Date Wed Jan 25 15:20:54 GMT 2012 Rank 65 Aligned Residues 314 % Identity 10% Template c1wxqA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3 Resolution 2.60 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.												.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	C	L	V	G	R	N	G	A	G	K	S	T	L	M	K	I	L	N	R	E	Q	G	L	D	D	G	R	I	I	Y	E	Q	D	L	I	V	A	R	L	Q	Q	D	P	P	R	N	V	E	G	S	V	.	.	.	.	.	.	.	.	.	.	.	Y	D	F	V	A	E	G	I	E	E	Q	A	E	Y	L	K
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	G	V	V	G	K	P	N	V	G	K	S	T	F	F	S	A	A	T	L	A	N	V	G	V	T	Y	A	I	T	D	H	P	C	K	E	L	G	C	S	P	N	P	Q	N	Y	E	Y	R	N	G	L	A	L	I	P	V	K	X	V	D	V	A	F	L	D	D	L	R	X	A	S	A	L	I	H	V	V	D
Template Known Secondary structure									T	T	S	S																							S		S	S	S			S				S	S	S				T	T																S	S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		R	Y	H	D	I	S	R	L	V	M	N	D	P	S	E	K	N	L	N	E	L	A	K	V	Q	E	Q	L	D	H	H	N	L	W	Q	L	E	N	R	I	N	E	V	L	A	Q	L	G	L	.	.	.	D	P	N	V	A	L	S	S	L	S	G	G	W	L	R	K	A	A	L	G	R	A	L	V	S	N	P	R
Query Conservation																																																			.	.	.
Alig confidence																																																			.	.	.
Template Conservation
Template Sequence		A	T	G	K	T	D	P	E	G	Q	P	T	D	Y	H	D	P	V	E	D	I	E	F	L	E	R	E	I	D	Y	W	I	Y	G	I	L	S	K	G	W	D	K	F	A	K	R	I	K	L	Q	K	I	K	L	E	S	A	I	A	E	H	L	S	G	I	G	V	N	E	N	D	V	W	E	A	X	H	K	L	N
Template Known Secondary structure		T	T			B		T	T	S		B		S																									T	T	T					S	T	T	T	S	S												T	G	G	G	T													T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		V	L	L	L	D	E	P	T	N	H	L	D	I	E	T	I	D	W	L	E	G	F	L	K	T	F	N	G	T	I	I	F	I	S	H	D	R	S	F	I	R	N	M	A	T	R	I	V	D	L	.	.	.	D	R	G	K	L	V	T	Y	P	G	N	Y	D	Q	Y	L	L	E	K	E	E	A	L	R	V	E	E
Query Conservation																																																				.	.	.
Alig confidence																					.	.																														.	.	.																				.	.	.	.	.
Template Conservation																					.	.																																																				.	.	.	.	.
Template Sequence		L	P	E	D	P	T	K	W	S	Q	D	D	L	L	A	F	A	S	E	.	.	I	R	R	V	N	K	P	X	V	I	A	A	N	K	A	D	A	A	S	D	E	Q	I	K	R	L	V	R	E	E	E	K	R	G	Y	I	V	I	P	T	S	A	A	A	E	L	T	L	R	K	A	.	.	.	.	.	A	K	A
Template Known Secondary structure				S		G	G	G													.	.						S									G	G	G	S															T	T																S		.	.	.	.	.	S	S	S
Template Predicted Secondary structure																					.	.																																																				.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	N	A	E	F	D	R	K	L	A	Q	E	E	V	W	I	R	Q	G	I	K	A	R	R	T	R	N	E	G	R	V	R	A	L	K	A	M	R	R	E	R	G	E	R	R	E	V	M	G	T	A	K	M	Q	V	E	E	A	S	R	S	G	K	I	V	F	E	M	E	D	V	C	Y	Q	V	N	G	K	Q
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	I	E	Y	I	P	A	L	X	V	I	K	E	K	V	L	D	R	F	G	S	T	G	V	Q	E	V	I	N	R	V	V	F	D	L	L	K	L	I	P	V	Y	P	V	H	D	E	Q	F	G	N	V	L	P	H	V	F	L	X	K	K	G	S	T	P	.	.	.	.	.	.	.	.	.	.	.	.	R	D
Template Known Secondary structure						S				T	T							T	S	S	S	S	S		S											T	T	S									S					S		S	S								T	T				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.													330	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		L	V	K	D	F	S	A	Q	V	L	R	G	D	K	I	A	L	I	G	P	N	G	.	.	C	G	K	T	T	L	L	K
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		L	A	F	K	V	H	T	D	L	G	K	G	F	L	Y	A	I	N	A	R	T	K	R	R	V	G	E	D	Y	E	L	Q
Template Known Secondary structure													T							T	T	T		S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions