Job Description P43672 Confidence 100.00% Date Wed Jan 25 15:20:54 GMT 2012 Rank 27 Aligned Residues 199 % Identity 23% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.									.	.	.	.	.	.	390
Predicted Secondary structure																																																													.						.	.	.	.	.	.	.	.
Query SS confidence																																																													.						.	.	.	.	.	.	.	.
Query Sequence		F	E	M	E	D	V	C	Y	Q	V	N	G	K	Q	L	V	K	D	F	S	A	Q	V	L	R	G	D	K	I	A	L	I	G	P	N	G	C	G	K	T	T	L	L	K	L	M	L	G	Q	L	Q	A	D	S	G	R	I	H	V	.	G	T	K	L	E	.	.	.	.	.	.	.	.	V	A	Y	F	D	Q	H
Query Conservation																																																													.						.	.	.	.	.	.	.	.
Alig confidence																																																													.						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	I	S	M	V	F	Q	H
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E	L	D	P	D	K	T	V	M	D	N	L	A	E	G	K	Q	E	V	M	V	N	G	K	P	R	H	V	L	G	Y	L	Q	D	F	L	F	H	P	K	R	A	M	T	P	V	R	A	L	S	G	G	E	R	N	R	L	L	L	A	R	L	F	L	K	P	S	N	L	L	I	L	D	E	P	T	N	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																	.
Template Conservation		.	.	.	.	.	.	.																																	.
Template Sequence		.	.	.	.	.	.	.	M	T	V	Y	E	N	I	A	F	P	L	K	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	.	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M	D	E	P	L	S	N
Template Known Secondary structure		.	.	.	.	.	.	.									T	T																				T	T		.	G	G	G	T	T			G	G	G			S	S												T	T			S						S	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																	.
Template SS confidence
									99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		L	D	V	E	T	L	E	L	L	E	E	L	I	D	S	Y	.	.	.	.	Q	G	T	V	L	L	V	S	H	D	R	Q	F	V	D	N	T	V	T	E	C	W	I	F	E	G	G	G	K	I	G	R	Y	V	G	G	Y	H	D	A	R	G
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																										.							.
Template Conservation																																															.							.
Template Sequence		L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	.	R	G	Q	L	L	Q	.	I	G	S	P	T	E	V	Y	L
Template Known Secondary structure		S																												S										S							.	T	T					.
Template Predicted Secondary structure																																															.							.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.		.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions