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Job DescriptionP75792
Confidence99.38%DateThu Jan 5 12:14:12 GMT 2012
Rank62Aligned Residues153
% Identity18%Templatec1mhsA_
PDB info PDB header:membrane protein, proton transportChain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase
Resolution8.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  GTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRI
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Template Sequence  GIMPCMDP. . PRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  BB





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   528.530..... ....540.........550.........560.........570.......
 
   92.......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  VIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDG
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Template Sequence  . . . . . . . . . . . . . . . IYNAERLGLGGGGDMPGSEVYDFVEAAD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SSSSSS
B


GGGGGGGTTTTTTS.....................................
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   578.580.........590.........600.....
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  IMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNN
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Template Sequence  . . . . . . . . . GFAEVFP. . . . . . QHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPG
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S

S......TTTT






GGGSSTTS
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   606...610.. .......620.........630.........640.........650.........660.........670
 
   252.......260.
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Query Sequence  HEGALNVIQA
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Template Sequence  LGAIIDALKT
Template Known Secondary structure  S
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   671........680
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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