 |
Job Description | P0A6D0 | Confidence | 70.13% | Date | Thu Jan 5 11:02:51 GMT 2012 |
Rank | 55 | Aligned Residues | 48 |
% Identity | 17% | Template | d1pdnc_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| Homeodomain-like
| Paired domain
|
Resolution | 2.50 |
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 50 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | S | S | A | K | Q | E | E | L | V | K | A | F | K | A | L | L | K | E | E | K | F | S | S | Q | G | E | I | V | A | A | L | Q | E | Q | G | F | D | N | I | . |
. |
. |
. |
. |
N | Q | S | K | V | S | R | M | L |
Query Conservation |   |
  |
|   |   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |
|   |
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|   |   |
|   |   |   |
|
| . |   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|
|
Template Sequence |   |
K | P | R | I | A | T | P | E | I | E | N | R | I | E | E | Y | K | R | S | S | P | G | M | F | S | W | E | I | R | E | K | L | I | R | E | G | V | . |
C | D | R | S | T | A | P | S | V | S | A | I | S | R | L | V |
Template Known Secondary structure |   |
|
|
| S | S |
| S | T |  |  |  |  |  |  |  | T | T | T | T |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | S | S | . | S |
| S | T | T |
|
|
|  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
. | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|