 |
Job Description | P0A6D0 | Confidence | 45.52% | Date | Thu Jan 5 11:02:51 GMT 2012 |
Rank | 85 | Aligned Residues | 45 |
% Identity | 11% | Template | c3iwfA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:transcription regulator rpir family; |
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
|
Resolution | 1.40 Å |
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | A | K | Q | E | E | L | V | K | A | F | K | A | L | L | K | E | E | K | F | S | S | Q | G | E | I | V | A | A | L | Q | E | Q | G | F | D | N | I | N | Q | S | K | V | S | R | M | L | T | K | F | G |
Query Conservation |   |
  |   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |
|   |
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |   | . | . | . | . | . |   | . |
|
|   |
|
|
|   |
|
|   |
|
|
|
|
Template Sequence |   |
T | K | N | E | K | K | I | A | Q | F | I | L | N | Y | P | H | K | V | V | N | X | T | S | Q | E | I | A | N | Q | L | . |
. |
. |
. |
. |
E | . |
T | S | S | T | S | I | I | R | L | S | K | K | V | T |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | T | . | S |
|  |  |  |  |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
|
. | |
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|