Job Description P0A6D0 Confidence 72.03% Date Thu Jan 5 11:02:51 GMT 2012 Rank 53 Aligned Residues 124 % Identity 14% Template c2e1cA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	S	S	A	K	Q	E	E	L	V	K	A	F	K	A	L	L	K	E	E	K	F	S	S	Q	G	E	I	V	A	A	L	Q	E	Q	G	F	D	N	I	N	Q	S	K	V	S	R	M	L	T	K	F	G	A	V	R	T	R	N	A	K	M	E	M	V	Y	C	L	P	A	E	L	G	V	P	T	T	S	S
Query Conservation
Alig confidence									.	.	.	.	.	.																					.	.	.			.	.	.																					.	.	.	.	.												.	.	.
Template Conservation									.	.	.	.	.	.																					.	.	.			.	.	.																					.	.	.	.	.												.	.	.
Template Sequence		L	D	E	I	D	K	K	.	.	.	.	.	.	I	I	K	I	L	Q	N	D	G	K	A	P	L	R	E	I	S	K	I	T	.	.	.	G	L	.	.	.	A	E	S	T	I	H	E	R	I	R	K	L	R	E	S	G	V	I	K	K	.	.	.	.	.	F	T	A	I	I	D	P	E	A	L	G	.	.	.
Template Known Secondary structure									.	.	.	.	.	.									T	T											.	.	.	T	S	.	.	.															T	T	S	S			.	.	.	.	.							G	G	G	G	T	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.																					.	.	.			.	.	.																					.	.	.	.	.												.	.	.
Template SS confidence
		25	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		P	L	K	N	L	V	L	D	I	D	Y	N	D	A	V	V	V	I	H	T	S	P	G	A	A	Q	L	I	A	R	L	L	D	S	L	G	K	A	E	G	I	L	G	T	I	A	G	D	D	T	.	I	F	T	T	P	A	N	G	F	T	V	K	D	L	Y	E	A	I	L	E	L	F	D
Query Conservation																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.																																										.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	S	M	L	A	F	I	L	V	K	V	K	A	G	K	Y	S	E	V	A	S	N	L	A	K	Y	P	E	I	V	E	V	Y	E	T	T	G	D	Y	D	M	V	V	K	I	R	T	K	N	S	E	E	L	N	N	F	L	D	L	I	G	S	I	P	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.													T	T											T	S	T	T								S	S	S	S	S								S	S														S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions