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Job DescriptionP39408
Confidence98.78%DateThu Jan 5 12:00:44 GMT 2012
Rank95Aligned Residues224
% Identity21%Templated4ubpc2
SCOP infoTIM beta/alpha-barrel Metallo-dependent hydrolases alpha-subunit of urease, catalytic domain
Resolution1.55

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40..... ....50.........60.........70....
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Query Sequence  FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAEN. . . . . . . . . . FARVLALAENYQPLYAALGLHPGMLEKHS
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Template Sequence  GIDTHVHFINP. . . . . . . DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSI
Template Known Secondary structure 


T.......TTT

SS
SS


TT
SSB




SS
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   133......140... ......150.........160.........170.........180.........190.........200.....
 
   75....80.........90.........100.........110.........120.........130......... 140.........150..
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Query Sequence  DVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHD. . KLAMHLKRHDLPR
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Template Sequence  APIMEQIDA. . . . . . . . . . . . GAAGL. . . . IHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRV
Template Known Secondary structure  ............T

B
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BGGG


T
B
B

TT
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TT

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   206...210.... ..... 220.........230.........240.........250.........260.........
 
   153......160.........170.........180...... ...190..
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Query Sequence  TGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ASKTRD
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Template Sequence  IHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDI
Template Known Secondary structure  TTTTSTTSSSTTTGGGGGGSTTB

STTSS
BTTT

TTSS
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   271........280.........290.........300.........310.........320.........330.........340.........350
 
   193......200.........210.........220.........230.........240... ......250........
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Query Sequence  VIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADE. . . . . . . . . . . IAQALLNNTYTLFNV
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Template Sequence  LHDLGII. . SMMSTDALAMGRAGE. . . . . MVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGI
Template Known Secondary structure  TTSS..
B



BTTSS
TT
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S
TT

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TTTT
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   351...... ..360.........370.. .......380.........390.........400.........410.........420
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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