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Job DescriptionP39408
Confidence98.80%DateThu Jan 5 12:00:44 GMT 2012
Rank93Aligned Residues253
% Identity9%Templated1o12a2
SCOP infoTIM beta/alpha-barrel Metallo-dependent hydrolases N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.... .....20.........30.........40.........50.........60.........70.........80..
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Query Sequence  FIDTHCHFDF. . PPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQ
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Template Sequence  FVDPHIHGVVGADTXNCDFSEXEEFLYSQGVTTFLATTVSTSLEKXKEILRKARDYILENPSTSLLGVHLEGPYISKEKK
Template Known Secondary structure 
TTTTTT
TTT

S


TT
S
SSS
GGG
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   45....50.........60.........70.........80.........90.........100.........110.........120....
 
   83......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  QALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSG.
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Template Sequence  G. . AHSEKHIRPPSERELSEIDSPAKXLTFAPEIESSELLLRLVKRDIVLSAGHSIATFEEFXKFYKEGVKRITHFPNGL
Template Known Secondary structure  T..TS
TTT




TT

TT
TTSTTGGGGGGGGGGT

SB


TTT

SSTTTTB
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   125 ....130.........140.........150.........160.........170.........180.........190.........200..
 
   162.......170.........180.........190.........200.........210.. .
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Query Sequence  . . . . . . . SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMP. . . . . . . . . . . . . . . . . . . . . L
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Template Conservation                                                                                  
Template Sequence  KPLHHREIGITGAGLLLDDVKLELICDGVHLSREXVKLVYKVKKANGIVLVTDSISAAGLKDGTTTLGDLVVKVKDGVPR
Template Known Secondary structure 



SS


TT

SSSSS
TGGG

B
TTTTS
S
SSSSTT
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   203......210.........220.........230.........240.........250.........260.........270.........280..
 
   214.....220.........230.........240.........250.........
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Query Sequence  NGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP
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Template Sequence  LEDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLD
Template Known Secondary structure 
TTS
B

B





TTT
T
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   283......290.........300.........310.........320........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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