Job Description P39408 Confidence 98.94% Date Thu Jan 5 12:00:44 GMT 2012 Rank 78 Aligned Residues 237 % Identity 16% Template c3v7pA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase family protein; PDBTitle: crystal structure of amidohydrolase nis_0429 (target efi-500396) from2 nitratiruptor sp. sb155-2 Resolution 1.35 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.																													20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	D	T	H	C	H	F	D	F	P	P	F	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		F	A	N	P	H	L	H	L	E	F	S	A	N	K	A	T	L	Q	Y	G	D	F	I	P	W	L	Y	S	V	I	R	H	R	E	D	L	L	P	L	C	D	G	A	C	L	E	Q	T	L	S	S	I	I	Q	T	G	T	T	A	I	G	A	I	S	S	Y	G	E	D	L	Q	A	C	I	D	.	.	.	.	S
Template Known Secondary structure									G	G	G	T	T		S	S		S			S	S																			S															T	T									S	S	S	T	T							.	.	.	.	B
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	I	G	L	D	L	F	G	D	D	P	Q	F	E	R	Q	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R
Query Conservation
Alig confidence																																																				.	.	.
Template Conservation																																																				.	.	.
Template Sequence		A	L	K	V	V	Y	F	N	E	V	I	G	S	N	A	A	T	A	D	V	M	Y	A	S	F	L	E	R	F	H	Q	S	K	K	H	E	N	E	R	F	K	A	A	V	A	I	H	S	P	Y	.	.	.	S	V	H	Y	I	L	A	K	R	A	L	D	I	A	K	K	Y	G	S	L	V	S	V	H	F	M	E
Template Known Secondary structure		S	S										B			G	G	G																	T	T		B	T	T										T	T	.	.	.	T	B																T								S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		137	.	.	140																												.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	M	H	L	K	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	G	G	T	I	T	Y	P	R	A	S	K
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	A	E	R	E	W	L	D	K	G	S	G	E	F	A	K	F	F	K	E	F	L	N	Q	T	R	P	V	N	D	T	K	S	F	L	E	L	F	K	E	L	H	T	L	F	V	H	M	V	W	A	N	E	E	E	I	Q	T	I	A	S	Y	N	A	H	I	I	H	C	P	I	S	N	R	L	L	G	N	G
Template Known Secondary structure		S										S		S										T				S		S	S								T	T	T	T	S								T	T												S														T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		T	R	D	V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q	G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	.	.	.	.	.	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V
Query Conservation																																																		.	.	.	.	.
Alig confidence											.																		.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation											.																		.	.	.	.	.	.	.	.	.
Template Sequence		V	L	D	L	E	K	I	K	S	.	I	P	Y	A	I	A	T	D	G	L	S	S	N	Y	S	L	N	.	.	.	.	.	.	.	.	.	M	Y	E	E	L	K	A	A	L	F	V	H	P	N	K	E	A	T	T	F	A	K	E	L	I	I	R	A	T	K	A	G	Y	D	A	L	G	F
Template Known Secondary structure					T	T	T	T	T	T	.	S									T	T	S		S				.	.	.	.	.	.	.	.	.												S	T	T	S														T								T
Template Predicted Secondary structure											.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions