Job Description P39408 Confidence 99.68% Date Thu Jan 5 12:00:44 GMT 2012 Rank 38 Aligned Residues 239 % Identity 15% Template c3jzeC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:dihydroorotase; PDBTitle: 1.8 angstrom resolution crystal structure of dihydroorotase (pyrc)2 from salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 1.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.
Query Sequence		I	D	T	H	C	H	F	D	F	P	P	F	S	G	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	.	.	.	.	.	.	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E
Query Conservation																																						.	.	.	.	.	.
Alig confidence											.	.	.	.																								.	.	.	.	.	.																													.
Template Conservation											.	.	.	.																																																										.
Template Sequence		D	D	W	H	V	H	L	R	D	.	.	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	S	P	I	T	T	V	D	A	A	I	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	.	Y	L	T	D	S	L	D	A	D
Template Known Secondary structure										S	.	.	.	.													T	T		S								S	S	S				S															S		T	T										.				T	T
Template Predicted Secondary structure											.	.	.	.																																																										.
Template SS confidence
		14	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.															.	.	140
Predicted Secondary structure																										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	I	G	L	D	L	F	.	.	.	.	.	G	D	D	P	Q	F	E	R	Q	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	K
Query Conservation																										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.									.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		E	L	E	R	G	F	H	E	.	.	.	.	.	.	.	.	G	V	F	T	A	A	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	V	D	A	I	M	P	V	L	E	R	M	E	K	L	G	I	P	L	L	V	H	G	E	V	T	H	A	D	V	D	I	F	D	R	E	A	R	F	I	D	T	V
Template Known Secondary structure									T	.	.	.	.	.	.	.	.	T	S							B	T	T	S	S	T	T		T	T	S	B	S		T	T	T	T											T												T	T	S		G	G	G									T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	M	H	L	K	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	I	T	Y	P	R	A	S	K	T	R	D	V	I	A	K	L	P	L
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	Q	Y	V	R	D	G	N	D	Y	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	D	M	L	V	G	G	I	R	P	H	L	Y	C	L	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S
Template Known Secondary structure									S	T	T							S			S										S		T	T																			T	T	S			G	G	G			S	S																	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																.	.	.	.	.	.
Query SS confidence					.	.																.	.	.	.	.	.
Query Sequence		A	S	L	.	.	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q	.	.	.	.	.	.	G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V	P
Query Conservation					.	.																.	.	.	.	.	.
Alig confidence					.	.																.	.	.	.	.	.																			.	.
Template Conservation																																														.	.
Template Sequence		G	F	T	R	A	F	L	G	T	D	S	A	P	H	S	R	H	R	K	E	T	S	C	G	C	A	G	C	F	N	A	P	S	A	L	G	S	Y	A	A	V	F	E	E	.	.	M	N	A	L	A	H	F	E	A	F	C	S	L	N	G	P	Q	F	Y	G	L	P
Template Known Secondary structure		T		T	T							B				B					S	S	S	S								T	T	T												.	.	T	T		G	G	G							T							T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions