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Job DescriptionP39408
Confidence81.08%DateThu Jan 5 12:00:44 GMT 2012
Rank148Aligned Residues163
% Identity18%Templatec3daqB_
PDB info PDB header:lyaseChain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40. ........50.........60.........70.........80.........90...
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Query Sequence  EEASLQRAAQAGVGKIIVPAT. . . . . . . EAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVV
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Template Sequence  LKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPV. . . . . . IAGTGTNDTEKSIQASIQ. . . . AK
Template Known Secondary structure  TT

SSGGGTGGGS
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   26...30.........40.........50.........60.........70..... ....80.........90... ..
 
   94.....100.........110.........120.........130... ......140....
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Query Sequence  AVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . SRRTHDKLAMH
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Template Sequence  ALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEV
Template Known Secondary structure  T
S


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   96...100.........110.........120.........130.........140.........150.........160.........170.....
 
   145....150.........160.........170.........180.........190.......
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Query Sequence  LKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKL
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Template Sequence  KKRIDTNSFAL. . . YSGNDDNVVEYYQRGGQGVISVIANVI. PKEFQALYDAQ
Template Known Secondary structure  TTS
TTTS...S
GGGTT

SGGGT
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   176...180...... ...190.........200.........210... ......220....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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