Job Description P39408 Confidence 98.34% Date Thu Jan 5 12:00:44 GMT 2012 Rank 117 Aligned Residues 253 % Identity 16% Template c3d6nA_ PDB info PDB header:hydrolase/transferase Chain: A: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.																												.	.	.	.	.	.																																			.
Query SS confidence												.	.																												.	.	.	.	.	.																																			.
Query Sequence		F	I	D	T	H	C	H	F	D	F	.	.	P	P	F	S	G	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	.	.	.	.	.	.	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	.
Query Conservation												.	.																												.	.	.	.	.	.																																			.
Alig confidence												.	.																												.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		F	I	D	I	H	V	H	L	R	D	P	G	Q	T	Y	K	E	D	I	E	S	G	S	R	C	A	V	A	G	G	F	T	T	I	V	C	M	P	N	T	N	P	P	I	D	N	T	T	V	V	N	Y	I	L	Q	K	S	K	S	V	G	L	C	R	V	L	P	T	G	T	I	T	K	G	R	K	G	K	E	I
Template Known Secondary structure											T	T	T		T	T	T													T	T								S		S	S	S		S		S																S	S						B		S	B	G	G	G		S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
																							76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	L	E	Q	L	Q	Q	A	L	E	R	R	P	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	V	G	E	I	G	L	D	L	F	G	D	D	P	Q	F	E	R	Q	Q	W	L	L	D	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	F	Y	S	L	K	E	A	G	C	V	A	F	T	D	D	G	S	P	V	M	D	S	S	V	M	R	K	A	L	E	L	A	S	Q	L	G	V	P	I	M	D	H	C	E	D	D	K	L	A	Y	G	V	I	N	E	G	E	V	S	A	L	L	G	L	S	S	R	A	P	E	A	E	E	I	Q	I	A	R
Template Known Secondary structure											T				B			T	T	S																		T	T										T	T	T	B		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	H	D	K	L	A	M	H	L	K	.	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	G	G	T	I	T	Y	P	R	A	S	K	T	R	D	V	I	A	K	L
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		D	G	I	L	A	Q	R	T	G	G	H	V	H	I	Q	H	V	S	T	K	L	S	L	E	I	I	E	F	F	K	E	K	G	V	K	I	T	C	E	V	N	P	N	H	L	L	F	T	E	R	E	V	L	N	S	G	A	N	A	R	V	N	P	P	L	R	K	K	E	D	R	L	A	L	I	E	G	V	K	R
Template Known Secondary structure																																T	T	T																T	T						G	G	G	G			S	S																	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q	G	Q	P	N	R	P	E	.	.	.	.	.	.	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V
Query Conservation																													.	.	.	.	.	.
Alig confidence			.																										.	.	.	.	.	.
Template Conservation			.
Template Sequence		G	.	I	I	D	C	F	A	T	D	H	A	P	H	Q	T	F	E	K	E	L	V	E	F	A	M	P	G	I	I	G	L	Q	T	A	L	P	S	A	L	E	L	Y	R	K	G	I	I	S	L	K	K	L	I	E	M	F	T	I	N	P	A	R	I	I	G	V
Template Known Secondary structure		T	.		S							B					G	G	G	S	S	S	G	G	G					B			T	T	T											T	T	S	S								T	T	T								T
Template Predicted Secondary structure			.
Template SS confidence
		297		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions