Job Description P39408 Confidence 98.86% Date Thu Jan 5 12:00:44 GMT 2012 Rank 86 Aligned Residues 243 % Identity 15% Template c3b40A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.									.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																						.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	D	T	H	C	H	F	D	F	P	P	F	S	G	D	E	E	A	S	.	.	.	.	.	.	.	.	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	F	A	R	V	L	A	L	A	E	N
Query Conservation																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	D	S	R	I	T	V	P	L	D	F	G	T	T	G	N	E	V	D	K	D	G	P	G	Q	L	D	L	V	K	A	G	R	G	R	L	S	G	A	A	L	A	I	F	G	W	P	E	M	W	P	H	K	P	T	P	G	F	V	D	E	A	R	H	Q	Q	E	I	R	Y	K	I	L	T	G	M	V	R	D
Template Known Secondary structure											T	T	T	T	B	T	T	B		T	T	S			S	S	S										T																					T	T
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		56	.	.	.	60	.	.	.													.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Q	P	L	Y	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	I	G	L	D	L	F	G	D	D	P	Q	F	E	R	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		F	P	N	Q	V	G	I	A	Y	S	P	E	D	F	R	R	L	A	M	E	G	K	F	A	I	V	M	S	M	L	N	A	Y	P	L	G	D	D	L	S	Q	L	D	K	.	.	.	.	W	A	A	R	G	V	R	M	F	G	F	S	Y	V	G	N	N	D	W	A	D	S	S	R	P	L	P	F	F	N	D	S
Template Known Secondary structure			T	T	T					S	S										T	T											S	G	G	G	T	T		T						.	.	.	.				T	T								S	S	S			S	S	B		B	S	S			G	G	G	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
									113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	H	D	K	L	A	M	H	L	K	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	.	.	.	.	.	.	.	.	.	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I
Query Conservation		.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																					.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																													.	.
Template Sequence		P	D	A	L	G	G	L	S	P	L	G	K	Q	A	V	E	R	L	N	D	L	G	V	I	I	D	V	.	.	S	Q	M	S	T	K	A	L	E	Q	V	A	A	L	S	R	A	P	I	V	A	S	H	S	A	P	R	A	L	V	D	I	K	R	N	L	S	D	H	E	M	Q	L	I	K	D	S	G	G	V	I
Template Known Secondary structure		T	T	T	T	S	S	B															T						.	.	T	T	B													S	S									B	T	T	T	S			T	T	S	B											T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		177	.	.	180	.	.	.	.	.	.																																																																			.	.	.	190
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	G	G	T	I	T	Y	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	K	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	V	G	F	P	A	Y	L	R	P	L	S	K	P	T	L	D	K	L	D	A	L	R	A	R	F	D	L	P	P	L	E	G	L	D	Y	A	L	M	P	G	D	P	I	I	T	I	W	P	E	Q	R	F	G	E	Y	A	S	A	L	Y	G	I	L	E	E	E	P	K	A	G	L	K	E	L	V	D	A	I
Template Known Secondary structure											S																	T	T						S	S	T	T	T	S	S				G	G	G	G	G	S																		T	S				B
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q	G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N
Query Conservation
Alig confidence																									.	.	.																					.
Template Conservation																									.	.	.																					.
Template Sequence		D	Y	T	V	K	K	V	G	I	D	H	V	G	I	S	S	D	F	N	D	G	G	G	.	.	.	V	D	G	W	K	D	V	S	E	I	R	N	V	T	A	E	L	I	T	R	.	G	Y	S	D	A	D	I	A	K	L	W	G	G	N	F	L	R	A	W	G
Template Known Secondary structure										G	G	G							B	T	T	T			.	.	.	B	B	T	B		S	G	G	G												.	T										T	T
Template Predicted Secondary structure																									.	.	.																					.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions