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Job DescriptionP39408
Confidence100.00%DateThu Jan 5 12:00:44 GMT 2012
Rank7Aligned Residues253
% Identity28%Templatec2xioA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative deoxyribonuclease tatdn1; PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a
Resolution1.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10........ .20.........30.........40.........50.........60.........70...
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Query Sequence  RFIDTHCHFDFPPFS. . . . . . . . . . GDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKH
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Template Sequence  KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEF
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TT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   74.....80....... ..90.........100.... .....110.........120.........130.........140........
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Query Sequence  SDVSLEQLQQALER. . . . RPAKVVAVGEIGLDLFG. DDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH
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Template Sequence  EKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRN
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TTTTT
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   149 150.........160.........170.........180.........190.........200.........210.........220
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Query Sequence  D. LPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQP. . . . . . .
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Template Sequence  RDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT. . EANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAF
Template Known Secondary structure  GGGSS
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   165....170.........180.........190.........200.. .......210.........220.........230.........240..
 
   221........230.........240.........250.........
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Query Sequence  . . . . . . . . . . . . . . . NRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP
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Template Sequence  PTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF. FP
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TTSTT


GGGT

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   243......250.........260.........270.........280.........290... ..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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