Job Description P39408 Confidence 99.81% Date Thu Jan 5 12:00:44 GMT 2012 Rank 34 Aligned Residues 253 % Identity 18% Template c2qpxA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:predicted metal-dependent hydrolase of the tim-barrel fold; PDBTitle: crystal structure of putative metal-dependent hydrolase (yp_805737.1)2 from lactobacillus casei atcc 334 at 1.40 a resolution Resolution 1.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																																																						.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	R	F	I	D	T	H	C	H	F	D	F	P	P	F	S	G	D	E	E	A	S	L	Q	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	L	L	D	H	H	C	H	F	L	I	D	G	K	V	P	N	R	D	D	R	L	A	Q	V	S	T	E	A	D	K	D	Y	P	L	A	D	T	K	N	R	L	A	Y	H	G	F	L	A	L	A	K	E	F	A	L	D	A	N	N	P	L	A	A	X	N	D	P	G	Y	A	T	Y	N	H	R	I	F	G
Template Known Secondary structure												B	B		T	T		S										T	S	S			T	T	S						T	T	S															S	S	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																									.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																																									.	.	.	.	.	.	.
Query Sequence		Q	A	G	V	G	K	I	I	V	P	A	T	.	.	.	.	.	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.																																																									.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	F	H	F	K	E	L	L	I	D	T	G	F	V	P	D	D	P	I	L	D	L	D	Q	T	A	E	L	V	G	I	P	V	K	A	I	Y	R	L	E	T	H	A	E	D	F	X	L	E	H	D	N	F	A	A	W	W	Q	A	F	S	N	D	V	K	Q	A	K	A	H	G	F	V	G	F	S	I	A	A	Y
Template Known Secondary structure			T	T								T	T				S	S	B												T	S																	T	T		S	S														T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
			98	.	100	.	.	.	.	.	.																				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence		.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		.	I	G	L	D	L	F	G	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	F	E	R	Q	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	.	.	.	.	.	.	.	.	.	.	H	D	K	L	A	M	H	L	K	R
Query Conservation		.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence		.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	G	L	H	L	E	P	V	N	V	I	E	A	A	A	G	F	D	T	W	K	H	S	G	E	K	R	L	T	S	K	P	L	I	D	Y	X	L	Y	H	V	A	P	F	I	I	A	Q	D	X	P	L	Q	F	H	V	G	Y	G	D	A	D	T	D	X	Y	L	G	N	P	L	L	X	R	D	Y	L	K	A
Template Known Secondary structure			T		S																								S																						T								S				T	T	S		G	G	G			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		148	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure				.	.																								.	.																.	.	.
Query SS confidence				.	.																								.	.																.	.	.
Query Sequence		H	D	.	.	L	P	R	T	G	V	V	H	G	F	S	G	S	L	Q	Q	A	E	R	F	V	Q	L	.	.	G	Y	K	I	G	V	G	G	T	I	T	Y	P	R	A	.	.	.	S	K	T	R	D	V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q	G	Q	P
Query Conservation				.	.																								.	.																.	.	.
Alig confidence				.	.									.															.	.																.	.	.
Template Conservation														.
Template Sequence		F	T	K	K	G	L	K	V	V	L	L	H	.	C	Y	P	Y	H	R	E	A	G	Y	L	A	S	V	F	P	N	L	Y	F	D	I	S	L	L	D	N	L	G	P	S	G	A	S	R	V	F	N	E	A	V	E	L	A	P	Y	T	R	I	L	F	A	S	D	A	S	T	Y	P	E	X	Y	G	L	A	A	R
Template Known Secondary structure			G	G	G	T								.		T	T												S	T	T						T	T					S	G	G	G									T	S	S	S		G	G	G									B	S
Template Predicted Secondary structure														.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.					.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	.	.	.	.	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V	P
Query Conservation																										.	.	.	.
Alig confidence		.	.	.																						.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Q	F	K	Q	A	L	V	A	H	F	N	Q	L	P	F	V	D	L	A	Q	K	K	A	W	I	N	A	I	C	W	Q	T	S	A	K	L	Y	H	Q	E
Template Known Secondary structure		.	.	.												T		S	S															T							T	T		G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions