Job Description P39408 Confidence 97.76% Date Thu Jan 5 12:00:44 GMT 2012 Rank 133 Aligned Residues 254 % Identity 14% Template c2gwnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydroorotase; PDBTitle: the structure of putative dihydroorotase from porphyromonas2 gingivalis. Resolution 1.85 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		F	I	D	T	H	C	H	F	D	F	P	P	F	S	G	.	.	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q	L	Q
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		C	I	D	D	Q	V	H	F	R	E	P	G	L	T	H	K	A	T	I	A	S	E	S	R	A	A	V	A	G	G	V	T	S	F	X	D	X	P	N	T	N	P	P	T	T	X	W	E	R	L	L	E	K	R	Q	I	G	A	D	T	A	W	A	N	Y	G	F	F	F	G	G	T	N	D	N	I	D	E	I	K
Template Known Secondary structure											T	T	T		T	T	T													T	T								S		S	S	S		S		S																S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.																																																	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	L	E	R	R	P	A	K	V	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	I	G	L	D	L	F	G	D	D	P	Q	F	E	R	Q	Q	W
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	D	K	H	L	V	P	G	L	L	F	L	G	S	S	T	G	N	X	L	V	D	N	K	E	T	L	E	K	I	F	G	E	C	D	L	L	I	A	T	H	C	E	K	E	E	I	I	R	A	N	K	E	H	Y	K	A	K	Y	G	N	D	L	D	I	H	F	H	P	L	I	R	S	E	E	A	C	Y	R
Template Known Secondary structure		T			T	T	S		S				B	S	S	S			G	G	G	B																S					B																				S				G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	H	D	K	L	A	M	H	L	K	R	H	.	.	D	L	P	R	T	G	V	V	H	G	F	S	G	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	G	G	T	I	T	Y	P	R	A	S	K	T	R	D
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		S	S	A	E	A	V	E	L	A	E	R	X	N	A	R	L	H	I	L	H	L	S	T	E	K	E	L	S	L	F	R	N	D	I	P	T	A	Q	K	R	I	T	S	E	V	C	V	H	H	L	W	F	S	D	T	D	Y	G	R	L	G	N	R	I	K	W	N	P	A	I	K	K	E	S	D	R	E	A	L	R
Template Known Secondary structure														T											T	G	G	G	G	G	S			S	S		G	G	G		S														G	G	G					G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	.	.	.	.	.	.	.	D	M	P	L	N	G	F	Q	G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V	P
Query Conservation																			.	.	.	.	.	.	.
Alig confidence								.											.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		A	A	V	R	N	G	.	R	I	D	I	I	A	T	D	H	A	P	H	L	L	R	E	K	E	G	S	C	L	Q	A	A	S	G	G	P	L	V	Q	H	S	L	L	A	L	L	E	L	C	N	Q	G	I	F	S	I	E	E	I	V	S	K	T	A	H	I	P	A	T	L	F	A	I	E
Template Known Secondary structure							S	.	S	S							B										S		T	T	T	S							T	T	T											T	T	S	S										T								T	B	T
Template Predicted Secondary structure								.
Template SS confidence
		300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions