Job Description P39408 Confidence 97.63% Date Thu Jan 5 12:00:44 GMT 2012 Rank 138 Aligned Residues 243 % Identity 16% Template c1rjqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:d-aminoacylase; PDBTitle: the crystal structure of the d-aminoacylase mutant d366a Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																																.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	D	T	H	C	H	F	D	F	P	P	F	S	G	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	E	N	F	A	R	V	L	A	L	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.
Template Sequence		F	I	D	S	H	T	H	D	D	N	Y	L	L	K	H	R	D	M	T	P	.	.	.	K	I	S	Q	G	V	T	T	V	V	T	G	N	C	G	I	S	L	A	P	L	A	H	A	N	P	P	A	P	L	D	L	L	D	E	G	G	S	F	R	F	A	R	F	S	D	Y	L	E	A	L	R	A	A	P	P	A
Template Known Secondary structure					S	S				T	T						T	T				.	.	.			T	T	T							S		T	T			S		S				S	S			T	T	G	G	G	G		S	S	S					S	S											S			S
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	I	G	L	D	L	F	G	D	D	.	P	Q	F	E	R	Q	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		V	N	A	A	C	M	V	G	H	S	T	L	R	A	A	V	M	P	D	L	R	R	E	A	T	A	D	E	I	Q	A	M	Q	A	L	A	D	D	A	L	A	S	G	A	I	G	I	S	T	G	A	F	Y	P	P	A	A	H	A	S	T	E	E	I	I	E	V	C	R	P	L	I	T	H	G	G	V	Y	A	T
Template Known Secondary structure		S																	S			S	S																					T								T	T	S	G	G	G	T	T											T						T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		133	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	R	R	T	.	.	.	.	.	.	.	H	D	K	L	A	M	H	L	K	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	.	.	.	.	.	.	.	.	.	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.												.													.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		H	M	R	D	E	G	E	H	I	V	Q	A	L	E	E	T	F	R	I	G	R	E	L	.	D	V	P	V	V	I	S	H	H	K	V	M	G	K	L	N	F	G	R	S	K	E	T	L	A	L	I	E	A	A	M	A	S	Q	D	V	S	L	D	A	Y	P	Y	V	A	G	S	T	M	L	K	Q	D	R	V	L
Template Known Secondary structure				S		S	S	T	T																.	T	S						S					S	G	G	G	T	T	T													T	T	S								S		S										T	T	T
Template Predicted Secondary structure																									.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
																																											179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	I	T	Y	P	R	A	S	K	T	R	D	V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.															.	.	.
Template Conservation																																																															.	.															.	.	.
Template Sequence		L	A	G	R	T	L	I	T	W	C	K	P	Y	P	E	L	S	G	R	D	L	E	E	I	A	A	E	R	G	K	S	K	Y	D	V	V	P	E	L	Q	P	A	G	A	I	Y	F	M	M	D	E	P	D	V	Q	R	I	L	A	F	G	.	.	P	T	M	I	G	S	A	G	L	P	H	D	E	R	.	.	.
Template Known Secondary structure		T	S	S								S	S		G	G	G	T	T		B								T	T	S											S																			S	T	.	.	T									T	T		S	S	.	.	.
Template Predicted Secondary structure																																																															.	.															.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	.	.	.	.	L	R	R	E	P	A	D	E	I	A	Q	A	L	L	N	N	T	Y	T	L	F	N	V	P
Query Conservation																				.	.	.	.
Alig confidence		.	.	.																.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	H	P	R	L	W	G	T	F	P	R	V	L	G	H	Y	S	R	D	L	G	L	F	P	L	E	T	A	V	W	K	M	T	G	L	T	A	A	K	F	G	L	A
Template Known Secondary structure		.	.	.			T																	T		S	S								T	T	T							T	T		T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions