Phyre 2 alignment of P39408 with c1k1dF

Job Description P39408
Confidence 98.74% Date Thu Jan 5 12:00:44 GMT 2012

Rank 96 Aligned Residues 248

% Identity 18% Template c1k1dF_

PDB info PDB header:hydrolase Chain: F: PDB Molecule:d-hydantoinase; PDBTitle: crystal structure of d-hydantoinase

Resolution 3.01 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence	F	I	D	T	H	C	H	F	.	.	.	.	D	F	P	P	F	S	G	D	E	E	A	S	L	Q	R	A	A	Q	A	G	V	G	K	I	I	V	P	A	T	E	A	E	N	F	A	R	V	L	A	L	A	E	N	Y	Q	P	L	Y	A	A	L	G	L	H	P	G	M	L	E	K	H	S	D	V	S	L	E	Q
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.
Template Conservation
Template Sequence	G	I	D	P	H	T	H	L	D	M	P	L	G	G	T	V	T	K	D	D	F	E	S	G	T	I	A	A	A	F	G	G	T	T	T	I	I	D	F	C	L	T	N	K	G	E	P	L	K	K	A	I	E	T	W	H	N	K	A	N	G	K	A	V	I	D	Y	G	F	H	L	M	I	S	E	I	T	D	D	V
Template Known Secondary structure								S	S				S	S	S			S	S												T	T												T	T	S														T	T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	Q	Q	A	L	E	R	R	P	A	K	V	V	A	V	G	E	I	G	L	D	L	F	G	D	D	P	Q	F	E	R	Q	Q	W	L	L	D	E	Q	L	K	L	A	K	R	Y	D	L	P	V	I	L	H	S	R	R	T	H	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.
Template Sequence	L	E	E	L	P	K	V	.	.	.	.	L	E	E	E	G	I	T	S	L	V	F	M	A	Y	K	N	V	F	Q	A	D	D	G	T	L	Y	C	T	L	L	A	A	K	E	L	G	A	L	V	M	V	H	A	E	N	G	D	V	I	D	Y	L	T	K	K	A	L	A	D	G	N	T	D	P	I	Y	H	A	L
Template Known Secondary structure								.	.	.	.			S	S				B			B	S	S	S	T	T	T	T	B																	T		B				B																	T	T			S	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
	134	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

													141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																												180
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	L	A	M	H	L	K	R	H	D	L	P	R	T	G	V	V	H	G	F	S	G	.	S	L	Q	Q	A	E	R	F	V	Q	L	G	Y	K	I	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	R	P	P	E	L	E	G	E	A	T	G	R	A	C	Q	L	T	E	L	A	G	S	Q	L	Y	V	V	H	V	T	C	A	Q	A	V	E	K	I	A	E	A	R	N	K	G	L	D	V	W	G	E	T	C	P	Q	Y	L	V	L	D	Q	S	Y	L	E	K	P	N	F	E	G	A	K	Y	V	W	S	P	P
Template Known Secondary structure	T	S																				T							S			S													T	T																G	G	G	G	T	S	S	T	T	G	G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.													.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	I	T	Y	P	R	A	S	K	T	R	D	V	I	A	K	L	P	L	A	S	L	L	L	E	T	D	A	P	D	M	P	L	N	G	F	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	Q	P	N	R	P	E	Q	A	A	R	V	F	A	V	L	C	E	L	R	R	E	P	A	D	E	I	A	Q	A	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.
Template Sequence	L	R	E	K	W	H	Q	E	V	L	W	N	A	L	K	N	G	Q	L	.	.	Q	T	L	G	S	D	Q	C	S	F	D	F	K	G	Q	K	E	L	G	R	G	D	F	T	K	I	P	N	G	G	P	I	I	E	D	R	V	S	I	L	F	S	E	G	V	K	K	G	R	I	T	L	N	Q	F	V	D	I	V
Template Known Secondary structure				T	T												T	S	S	.	.							B					T	T	T	T	G	G	G	G	S	S		G	G	G	S				B			T	T	T									T	G	G	G	T	S	S
Template Predicted Secondary structure																				.	.
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

	249	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	N	N	T	Y	T	L	F	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	T	R	I	A	K	L	F	G	L
Template Known Secondary structure	T							T	T
Template Predicted Secondary structure
Template SS confidence
	369	370	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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