Job Description P0A9K3 Confidence 98.51% Date Thu Jan 5 11:10:33 GMT 2012 Rank 23 Aligned Residues 113 % Identity 23% Template c3tmiA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i Resolution 2.90 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		V	I	K	P	R	T	P	N	Q	A	Q	Y	I	A	N	I	L	D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	.	.	.	I	R	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D
Query Conservation																																																		.	.	.
Alig confidence							.																																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	K	P	R	.	N	Y	Q	L	E	L	A	L	P	A	M	K	G	K	N	T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	Q	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.						T	T					T	T									T	T	S																T	S		T	T										S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.												.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.												.	.	.	.
Query Sequence		P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	L	I	E	R	N	V	I	E	V	A	P	.	.	.	.	L	A	Y	M	R	G	R	T	L	N	D	.	.	.	.	A	F	I	I	L	D	E	S	Q	N	T	T
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.												.	.	.	.
Alig confidence		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.												.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	E	Q	Q	K	S	V	F	S	K	Y	F	E	R	H	G	Y	R	V	T	G	I	S	G	A	T	A	E	N	V	P	V	E	Q	I	V	E	N	N	D	I	I	I	L	T	P	Q	I	L	V	N	N	L	K	K	G	T	I	P	S	L	S	I	F	T	L	M	I	F	D	E	C	H	N	T	S
Template Known Secondary structure		.	.	.												T	T	T	T								T	T	T		S	S	S								T		S															T	T	S	S			G	G	G		S						T	G	G	G	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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