Job Description P0A9K3 Confidence 95.05% Date Thu Jan 5 11:10:33 GMT 2012 Rank 276 Aligned Residues 135 % Identity 14% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.				.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.														.	.	.	.	.	.	.										.	.	.
Query SS confidence																																									.	.	.	.	.	.														.	.	.	.	.	.	.										.	.	.
Query Sequence		I	L	D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	.	.	.	.	.	.	T	R	P	A	V	E	A	G	E	K	L	G	F	.	.	.	.	.	.	.	L	P	G	D	L	S	Q	K	V	.	.	.	D	P	Y
Query Conservation																																									.	.	.	.	.	.														.	.	.	.	.	.	.										.	.	.
Alig confidence																				.	.																				.	.	.	.	.	.														.	.	.	.	.	.	.										.	.	.
Template Conservation																				.	.
Template Sequence		V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	.	.	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	S	I	A	E	N	I	A	Y	G	D	N	S
Template Known Secondary structure				S	S	S							S	S	S	T	T			.	.							T	T	S	S			S						S	S	S	S		B	T	S	S						T	T	S						S	S					S	S	B						T				S	S
Template Predicted Secondary structure																				.	.
Template SS confidence
		1056	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.			.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.																	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.				250	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.						.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.						.	.	.
Query Sequence		L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	K	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	R	G	R	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	A	F	I	I	L	D	E	S	.	Q	N	T	T	I	.	.	.	E	Q	M	K	M	F
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.						.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.						.	.	.
Template Conservation
Template Sequence		R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A
Template Known Secondary structure																	T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S																			S	S					S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		1134	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	I	G	F	N	S	K	A	V	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	K	A	R	E	G	R	T	C	I	V	I
Template Known Secondary structure						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		1214	.	.	.	.	.	1220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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