Job Description P0A9K3 Confidence 98.26% Date Thu Jan 5 11:10:33 GMT 2012 Rank 36 Aligned Residues 134 % Identity 22% Template c3fe2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp Resolution 2.60 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		V	I	K	P	R	T	P	N	Q	A	Q	Y	I	A	N	I	L	D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	.	.	.	.	.	.	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	F	T	E	P	T	A	I	Q	A	Q	G	W	P	V	A	L	S	G	L	D	M	V	G	V	A	Q	T	G	S	G	K	T	L	S	Y	L	L	P	A	I	V	H	I	N	H	Q	P	F	L	E	R	G	D	G	P	I	C	L	V	L	A	P	T	R	E	L	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T			S														T	T									T	T	S																T	S					T	T				S						S	S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.		.	.	.	240	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.								.									.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.								.									.	.	.	.
Query Sequence		K	V	D	P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	K	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	.	.	.	.	.	.	R	G	R	T	L	N	D	.	A	F	I	I	L	D	E	S	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.								.									.	.	.	.
Alig confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.								.									.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Q	Q	V	Q	Q	V	A	A	E	Y	C	R	A	C	R	L	K	S	T	C	I	Y	G	G	A	P	K	G	P	Q	I	R	D	L	E	R	G	V	E	I	C	I	A	T	P	G	R	L	I	D	F	L	E	C	G	K	T	N	L	R	R	T	T	Y	L	V	L	D	E	A	D	R	M	L
Template Known Secondary structure		.	.	.	.	.	.														T	T								T	T	S											S			S															T	T	S				T	T							T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	T	T	I	E	Q	M	K	M	F	L	T	R	I	G	F	N	S	K	A	V	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	G	F	E	P	Q	I	R	K	I	V	D	Q	I	R	P	D	R	Q	T	L	M	W
Template Known Secondary structure			T	T											T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions