Job Description P0A9K3 Confidence 97.64% Date Thu Jan 5 11:10:33 GMT 2012 Rank 91 Aligned Residues 142 % Identity 15% Template c3dmqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription Resolution 3.20 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																	.	.																																						.	.	.	.	.	.	.
Query SS confidence																	.	.																																						.	.	.	.	.	.	.
Query Sequence		P	N	Q	A	Q	Y	I	A	N	I	L	D	H	D	I	.	.	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	.	.	.	.	.	.	.	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D
Query Conservation																	.	.																																						.	.	.	.	.	.	.
Alig confidence																	.	.																																						.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	X	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	X	L	R	R	F	N	L	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	S	S									T	T	S																T	S	S										T	T	T												S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																									.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	K	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	R	G	R	.	.	.	.	.	.	.	.	T	L	N	D	A	F	I	I	L	D	E	S	Q	N	T	.	.	.	.	.	T	I	E	Q	M	K	M	F	L	T	R	I	G
Query Conservation																																									.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence		.	.	.																																					.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A
Template Known Secondary structure		.	.	.															T	T		S	S	S	T	T		S											T	S	T	T	T	T					T	S										S	S					B	T	T	B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		261	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		F	N	S	.	.	K	A	V	I	T	G	D	V	T	Q	I	D	L
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	X
Template Known Secondary structure		T	T		S	S				S		S	S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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