Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9K3
Confidence99.65%DateThu Jan 5 11:10:33 GMT 2012
Rank6Aligned Residues154
% Identity25%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   116...120.........130.........140.........150.........160.........170.........180.
Predicted Secondary structure 






















..............
Query SS confidence 

































































. . . . . . . . . . . . . .
Query Sequence  GVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKL. . . . . . . . . . . . . .
Query Conservation    
 
 
  
   
 

    

   







 

 
 
   
      



 

 
 

  
..............
Alig confidence 
















































.















..............
Template Conservation       

 

  

  

   












 

  

  
     . 








 


 
  

      



Template Sequence  QGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGN. GPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
Template Known Secondary structure  TTS



TSS

TTS
TT
S.S
SSTTT


Template Predicted Secondary structure 




















.







Template SS confidence 















































































   466...470.........480.........490.........500.........510.... .....520.........530.........540....
 
   182.......190.........200.........210.........220.....
Predicted Secondary structure  ....................................











Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .











































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAP
Query Conservation  ....................................





  

  


 

 
 
                 


 
Alig confidence  ....................................






















........












Template Conservation       
          
            
  
         
                ........  

  
 

  
Template Sequence  CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAE. . . . . . . . RELLMNADVICCT
Template Known Secondary structure 

GGGGG


TTGGGBT
TT
TTTS


........
S
Template Predicted Secondary structure 












........

Template SS confidence 















































































   545....550.........560.........570.........580.........590.........600... ......610......
 
   226...230...... ...240.........250.........260.........270.........280..
Predicted Secondary structure 








...






















Query SS confidence 










. . .













































Query Sequence  LAYMRGRTLND. . . AFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKS
Query Conservation 
 






  ...  







 
   

  


 
  




 

  




    
Alig confidence 










...





















..












..






Template Conservation   
 
    
    

 







  
   



  ..  
  




  
..


 
  
Template Sequence  CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL. . GAKQLILVGDHCQ. . LGPVVMC
Template Known Secondary structure  TGGGG
TTTTT


STTGGGS
TT..TBS
TTS..






Template Predicted Secondary structure 












..







..



Template SS confidence 



























































   617..620.........630.........640.........650.. .......660..... ....670..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions