Job Description P0A9K3 Confidence 97.43% Date Thu Jan 5 11:10:33 GMT 2012 Rank 111 Aligned Residues 117 % Identity 24% Template c2vsfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dna repair helicase rad3 related protein; PDBTitle: structure of xpd from thermoplasma acidophilum Resolution 2.9 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																															.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	K	L	G	F	L	P	G	D
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		V	A	L	E	S	P	T	G	S	G	K	T	I	M	A	L	K	S	A	L	Q	Y	S	S	E	R	K	.	L	K	V	L	Y	L	V	R	T	N	S	Q	E	E	Q	V	I	K	E	L	R	S	L	S	S	T	M	K	I	R	A	I	P	M	Q	G	R	V	N	M	C	I	L	Y	R	M	V	D	D	L	H	E
Template Known Secondary structure								S	S	S	S	T	T						T	T		S	S	T	T	T	T	S	.								S	S																T	T	S															S	T								S	S
Template Predicted Secondary structure																													.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																																										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	Q	K	V	D	P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	A	E	S	L	A	K	F	C	N	M	K	K	R	E	V	M	A	G	N	E	A	A	C	P	Y	F	N	F	K	I	R	S	D	E	T	K	R	F	L	F	D	E	L	P	T	A	E	E	F	Y	D	Y	G	E	R	N	N	V	C	P	Y	E	S	M	K	A	A	L	P	D	A	D	I	V	I	A	P	Y
Template Known Secondary structure																					T		G	G	G	S	T	T		S	G	G	G	G											T															T											G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		227	.	.													230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	M	.	.	.	.	.	.	.	.	.	.	.	.	R	G	R	T	L	N	D	A	F	I	I	L	D	E	S	Q	N	T	T	I	E	Q	M	K	M	F
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	F	L	N	R	S	V	A	E	K	F	L	S	H	W	G	V	S	R	N	Q	I	V	I	I	L	D	E	A	H	N	L	P	D	I	G	R	S	I	G
Template Known Secondary structure					T	S															S	T	T						T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions