Job Description P0A9K3 Confidence 96.42% Date Thu Jan 5 11:10:33 GMT 2012 Rank 185 Aligned Residues 141 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D	P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																.																.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																.																.	.	.	.	.	.	.	.	.
Template Sequence		K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	.	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	.	.	.	.	.	.	.	.	.	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V
Template Known Secondary structure		S	S								S	T	T	S	S															T	T	.											S	S	S			.	.	.	.	.	.	.	.	.												T										S
Template Predicted Secondary structure																																.																.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
					209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.	.	.																																					.	.												.	.
Query SS confidence		.	.	.																																					.	.												.	.
Query Sequence		.	.	.	F	E	K	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	R	G	R	T	L	N	D	A	F	I	I	L	D	E	S	.	.	Q	N	T	T	I	E	Q	M	K	M	F	.	.	L	T	R	I	G	F	N	S	K	A	V	I	T	G	D	V	T	Q	I	D	L	P	R	N	T	K
Query Conservation		.	.	.																																					.	.												.	.
Alig confidence		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.												.	.																			.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Template Sequence		I	I	A	S	E	G	V	E	K	F	K	N	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	.	.	.	.	.	.	G	Q
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T																		S								T	T		.	.	.	.	.	.		T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.																	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.
		282	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		S	G	L	R	H	A	I	E	V	L	A	.	.	D	V	E	E	I	S	F	N	F	F	H	S	E	D
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K	L	D	G	H	A
Template Known Secondary structure		T																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions