Job Description P0A9K3 Confidence 98.50% Date Thu Jan 5 11:10:33 GMT 2012 Rank 24 Aligned Residues 126 % Identity 21% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		122	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		T	P	N	Q	A	Q	Y	I	A	N	I	L	.	.	.	.	.	.	D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D	P	Y
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	.	.	K	Q	V	A	V	L	V	P	T	T	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		S	S	S												T	T	T													T	T	T	.	.								S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.			650	.	.	.	.	.	.	.	.	.	660	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.																		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.													.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.													.
Query Sequence		L	R	P	L	Y	D	A	L	F	E	M	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	K	V	E	K	L	I	E	R	N	V	I	E	V	A	.	.	.	P	L	A	Y	M	R	G	R	T	L	N	D	.	A	F	I	I	L	D	E	S	Q	N	T	T	I	E	Q	M	K	M
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.													.
Alig confidence		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.													.																.
Template Conservation		.																																																																													.
Template Sequence		.	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	.	K	E
Template Known Secondary structure		.											S	T	T	T	T							S	T	T	S														T	T			S						T					S					S	S								S	G	G	G	S					.
Template Predicted Secondary structure		.																																																																													.
Template SS confidence
			663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.		.	740
		255	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	T	R	I	G	F	N	S	K	A	V	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	K	A	M	R	A	N	V	D	I	L	T	L
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		741	.	.	.	.	.	.	.	.	750	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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