Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9K3
Confidence86.86%DateThu Jan 5 11:10:33 GMT 2012
Rank489Aligned Residues34
% Identity21%Templatec1xpuB_
PDB info PDB header:transcription/rnaChain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   138.140.........150.........160.........170.
Predicted Secondary structure 









Query SS confidence 

































Query Sequence  TFGVGPAGTGKTYLAVAAAVDALERQEIRRILLT
Query Conservation 
   







 

 
 
   
      



 
Alig confidence 

































Template Conservation    
 
  
 


 

  

            
  
Template Sequence  GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL
Template Known Secondary structure 
SSSS
TTS
Template Predicted Secondary structure 











Template SS confidence 

































   174.....180.........190.........200.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions