Job Description P0A9K3 Confidence 96.33% Date Thu Jan 5 11:10:33 GMT 2012 Rank 189 Aligned Residues 147 % Identity 20% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D	P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	K	V	E
Query Conservation
Alig confidence																																.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																																.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	.	.	Y	K	V	G	L	V	A	A	D	.	.	.	.	.	.	.	V	Y	R	P	A	A	Y	D	Q	.	.	.	.	.	.	.	.	.	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	T	S	.	.					B					.	.	.	.	.	.	.		S	S	S		S				.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.					.	.	.	.
Query SS confidence																																	.	.	.					.	.	.	.
Query Sequence		K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	R	G	R	T	L	N	D	A	F	I	I	L	D	E	S	.	.	.	Q	N	T	T	.	.	.	.	I	E	Q	M	K	M	F	L	T	R	I	G	F	N	S	K	A	V	I	T	G	D	V	T	Q	I	D	L	P	R	N	T	K	S	G	L	R	H
Query Conservation																																	.	.	.					.	.	.	.
Alig confidence																																	.	.	.					.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.
Template Sequence		E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	.	.	.	.	.	.	.	Q	K	A	Y	D	L
Template Known Secondary structure			S	S				T	T													T	T		S									S			S	S	T																		S								T	T	T	G	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	V	L	A	D	V	E	E	I	S	F	N	F	F	H	S	E	D
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		A	S	R	F	H	Q	A	S	P	I	G	S	V	I	.	I	T	K	M	D
Template Known Secondary structure							T	T		S	S					.				S	S
Template Predicted Secondary structure																.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions