 |
Job Description | P09980 | Confidence | 96.40% | Date | Thu Jan 5 11:02:33 GMT 2012 |
Rank | 208 | Aligned Residues | 55 |
% Identity | 16% | Template | c3bgwD_ |
PDB info |
PDB header:replication | Chain: D: PDB Molecule:dnab-like replicative helicase; |
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
|
Resolution | 3.91 Å |
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | G | P | C | L | V | L | A | G | A | G | S | G | K | T | R | V | I | T | N | K | I | A | H | L | I | R | G | C | G | Y | Q | A | R | H | I | A | A | V | T | F | T | N | K | A | A | R | E | M | K | E | R | V | G | Q | T | L | G | R |
Query Conservation |   |
  |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|   |   |
|
|   |
|   |   |   |
|
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |
|   |
|   |
|
|   |
|
|
|   |
|   |   |   |
|
|   |   |   |
|   |   |
|   | . | . | . | . |   |
|
|   |   |
|   | . |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
Template Sequence |   |
R | R | N | F | V | L | I | A | A | R | P | S | M | G | K | T | A | F | A | L | K | Q | A | K | N | M | S | D | N | D | D | . |
. |
. |
. |
V | V | N | L | H | S | L | . |
E | M | G | K | K | E | N | I | K | R | L | I | V | T | A | G | S |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  |  |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . | . | . |  |  |  |  |  |
| S | . | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  | S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . |
|  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
194 | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | |
|
|
|
. | . | . | . | . | 230 | . | |
. | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|