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Job DescriptionP09980
Confidence98.55%DateThu Jan 5 11:02:33 GMT 2012
Rank33Aligned Residues89
% Identity18%Templatec2zj2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10... ......20.........30.........40.........50.........60.........70...
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Query Sequence  RLNPGQQQAVEF. . . VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR. . . . .
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Template Sequence  SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG. . . GKAVYIVPLKALAEEKFQEFQDWEKIGLRVA
Template Known Secondary structure  B

TTTGGGT
S
GGGT
...SSSTTSTGGGGGGT

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   23......30.........40.........50.........60........ .70.........80.........90.........
 
   74.....80.........90...
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Query Sequence  . . . . . . . . . . . . KEARGLMISTFHTLGLDIIK
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Template Sequence  MATGDYDSKDEWLGKYDIIIATAEKFDSLLRH
Template Known Secondary structure 
S

S


GGGGG
S
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   100.........110.........120.........130.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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